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plant:banana [2020/07/01 16:05] rkoebnik [Pathogen: //Xanthomonas campestris// pv. //musacearum// (Xcm)] |
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- | ====== Banana (//Musa balbisiana// | ||
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- | Author: Rita Fernandes\\ | ||
- | Internal reviewer: Noemi Casarin\\ | ||
- | Expert reviewer: FIXME | ||
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- | ===== Pathogen: // | ||
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- | ==== Resistance gene: germin-like protein 8-14 gene ==== | ||
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- | === Synonyms === | ||
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- | GER1, GLP1, Ma02_g20530.1, | ||
- | === Source === | ||
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- | //Musa alcuminata// | ||
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- | === Status (identified, | ||
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- | Identified (Tripathi //et al//., 2019), mapped on chromosome 2 and 9, sequenced (D' | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Stress associated gene, similar to germin 3 of // | ||
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- | ---- | ||
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- | ==== Resistance gene: //RPM1// gene ==== | ||
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- | === Synonyms === | ||
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- | Putative disease resistance RPM1, Ma09_g28690, | ||
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- | === Source === | ||
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- | //Musa alcuminata// | ||
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- | === Status (identified, | ||
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- | Identified, mapped on chromosome 9, sequenced (D' | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Gene involved in plant-pathogen interaction, | ||
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- | ---- | ||
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- | ==== Resistance gene: BAG family molecular chaperone regulator 6-like ==== | ||
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- | === Synonyms === | ||
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- | Ma10_g14770, | ||
- | |||
- | === Source === | ||
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- | //Musa alcuminata// | ||
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- | === Status (identified, | ||
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- | Identified (Tripathi //et al//., 2019), mapped on chromosome 2 and 9, sequenced (D' | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Protein binding (GO: | ||
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- | ---- | ||
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- | ==== Resistance gene: MYB transcription factor gene ==== | ||
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- | === Synonyms === | ||
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- | Ma05_g25630, | ||
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- | === Source === | ||
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- | //Musa alcuminata// | ||
- | === Status (identified, | ||
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- | Identified, mapped on chromosome 5, sequenced (Medina-Suárez //et al//., 1997; D'Hont //et al//., 2012; Hubert //et al//., 2014). | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Gene coding for MYB transcription factor, involved in DNA binding (GO: | ||
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- | ---- | ||
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- | ==== Resistance gene: Ninja-family protein AFP3-like gene ==== | ||
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- | === Synonyms === | ||
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- | Ma04_t39350.1, | ||
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- | === Source === | ||
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- | //Musa alcuminata// | ||
- | === Status (identified, | ||
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- | Identified, mapped on chromosome 4, sequenced (D' | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Coding for Ninja-family protein AFP3-like. Signal transduction (GO: | ||
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- | ---- | ||
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- | ==== Resistance gene: lipase-like //PAD4// ==== | ||
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- | === Synonyms === | ||
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- | Ma06_t14360.1 (Tripathi //et al//., 2019), LOC103987676, | ||
- | === Source === | ||
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- | //Musa alcuminata// | ||
- | === Status (identified, | ||
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- | Identified, mapped on chromosome 6, sequenced (Medina-Suárez //et al//., 1997; D'Hont //et al//., 2012; Hubert //et al//., 2014). | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Gene coding for lipase-like PAD4 protein, which is involved in SA signalling, in hydrolase activity (GO: | ||
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- | ---- | ||
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- | ==== Resistance gene: putative 26.5 kDa heat shock ==== | ||
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- | === Synonyms === | ||
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- | GSMUA_Achr9G28520_001, | ||
- | |||
- | === Source === | ||
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- | //Musa alcuminata// | ||
- | === Status (identified, | ||
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- | Identified, mapped on chromosome 6 (D' | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Gene coding for 26.5 kDa heat shock protein, mitochondrial-like. Protein processing in endoplasmic reticulum, conserved biosystem, response to heat (GO: | ||
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- | ---- | ||
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- | ==== Resistance gene: vicilin-like seed storage At2g18540 ==== | ||
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- | === Synonyms === | ||
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- | Ma03_t31180.1, | ||
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- | === Source === | ||
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- | //Musa alcuminata// | ||
- | === Status (identified, | ||
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- | Identified, mapped on chromosome 3, sequenced (D' | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Gene coding for signal peptide vicilin-like seed storage protein At2g18540, plant-derived inhibitors known for having antibacterial and antifungal activity, nutrient reservoir activity (GO: | ||
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- | ---- | ||
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- | ==== Resistance gene: //hrap// ==== | ||
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- | === Synonyms === | ||
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- | Extracellular ribonuclease LE-like, AF168415.1, LOC107877517. | ||
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- | === Source === | ||
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- | Transformed into banana cultivars ‘Sukali Ndiizi’ and ‘Nakinyika’, | ||
- | === Status (identified, | ||
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- | Identified, mapped on chromosome 7 (of sweet pepper) and sequenced (Chen //et al//., 2000; Qin //et al//., 2014). | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Extracellular ribonuclease LE-like, encodes for hypersensitive response assisting protein, ribonuclease T2 activity, RNA binding. Role in intensifying the hypersensitive response mediated by harpinPSS (harpin derived from // | ||
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- | ---- | ||
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- | ==== Resistance gene: //Pflp// ==== | ||
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- | === Synonyms === | ||
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- | ap1, LOC107839912, | ||
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- | === Source === | ||
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- | Transformed into banana cultivars ‘Sukali Ndiizi’ and ‘Nakinyika’, | ||
- | === Status (identified, | ||
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- | Mapped on chromosome 8 of sweet pepper (//Capsicum annuum)//, sequenced (Dayakar //et al//., 2003; Qin //et al//., 2014). | ||
- | === Molecular markers === | ||
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- | //NA// | ||
- | === Brief description === | ||
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- | Encodes for ferredoxin-like protein (member of photosynthesis proteins), chloroplastic. Known resistance against various bacterial pathogens like // | ||
- | |||
- | ---- | ||
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- | ===== References ===== | ||
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- | Chen CH, Lin HJ, Ger MJ, Chow D, Feng TY (2000). cDNA cloning and characterization of a plant protein that may be associated with the harpinPSS-mediated hypersensitive response. Plant Mol. Biol. 43: 429-438. DOI: [[https:// | ||
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- | D’Hont A, Denoeud F, Aury JM, Baurens FC, Carreel F, Garsmeur O, Noel B, Bocs S, Droc G, Rouard M (2012). The banana (//Musa acuminata// | ||
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- | Dayakar BV, Lin HJ, Chen CH, Ger MJ, Lee BH, Pai CH, Chow D, Huang HE, Hwang SY, Chung MC (2003). Ferredoxin from sweet pepper (//Capsicum annuum// L.) intensifying harpin pss-mediated hypersensitive response shows an enhanced production of active oxygen species (AOS). Plant Mol. Biol. 51: 913-924. DOI: [[https:// | ||
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- | Hubert O, Piral G, Galas C, Baurens F-C, Mbéguié-A-Mbéguié D (2014). Changes in ethylene signaling and MADS box gene expression are associated with banana finger drop. Plant Sci. 223: 99-108. DOI: [[https:// | ||
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- | Medina-Suárez R, Manning K, Fletcher J, Aked J, Bird CR, Seymour GB (1997). Gene expression in the pulp of ripening bananas (two-dimensional sodium dodecyl sulfate-polyacrylamide gel electrophoresis of //in vitro// translation products and cDNA cloning of 25 different ripening-related mRNAs). Plant Physiol. 115: 453-461. DOI: [[https:// | ||
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- | Namukwaya B, Tripathi L, Tripathi J, Arinaitwe G, Mukasa S, Tushemereirwe W (2012). Transgenic banana expressing //Pflp// gene confers enhanced resistance to // | ||
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- | Qin C, Yu C, Shen Y, Fang X, Chen L, Min J, Cheng J, Zhao S, Xu M, Luo Y (2014). Whole-genome sequencing of cultivated and wild peppers provides insights into // | ||
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- | Tripathi L, Tripathi JN, Kiggundu A, Korie S, Shotkoski F, Tushemereirwe WK (2014). Field trial of // | ||
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- | Tripathi L, Tripathi JN, Shah T, Muiruri KS, Katari M (2019). Molecular Basis of Disease Resistance in Banana Progenitor //Musa balbisiana// | ||
- | |||
- | ---- | ||
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- | ===== Other references used to research this subject ===== | ||
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- | Biruma M, Pillay M, Tripathi L, Blomme G, Abele S, Mwangi M, Bandyopadhyay R, Muchunguzi P, Kassim S, Nyine M, Turyagyenda L, Eden-Green S (2007). Banana // | ||
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- | Endah R, Coutinho T, Chikwamba R (2009). // | ||
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- | Jin Y, Goodman RE, Tetteh AO, Lu M, Tripathi L (2017). Bioinformatics analysis to assess potential risks of allergenicity and toxicity of HRAP and PFLP proteins in genetically modified bananas resistant to // | ||
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- | Muwongeab A, Tripathi J, Kunert K, Tripathi L (2016). Expressing stacked //HRAP// and //PFLP// genes in transgenic banana has no synergistic effect on resistance to // | ||
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- | Nakato G, Christelová P, Were E, Nyine M, Coutinho TA, Doležel J, Uwimana B, Swennen R, Mahuku G (2019). Sources of resistance in //Musa// to // | ||
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- | Nakato V, Mahuku G, Coutinho T 2018). // | ||
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- | Smith J, Jones D, Karamura E, Blomme G, Turyagyenda F (2008). An analysis of the risk from // | ||
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- | Ssekiwoko F, Kiggundu A, Tushemereirwe W, Karamura E, Kunert K (2015). // | ||
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- | Tripathi L, Mwaka H, Tripathi JN, Tushemereirwe WK (2010). Expression of sweet pepper //Hrap// gene in banana enhances resistance to // | ||