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bacteria:t3e:xopap [2020/04/16 23:18] 127.0.0.1 external edit |
bacteria:t3e:xopap [2021/01/25 21:41] (current) rkoebnik |
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====== XopAP ====== | ====== XopAP ====== | ||
- | Author: Saul Burdman\\ | + | Author: |
- | Internal reviewer: | + | Internal reviewer: |
- | Expert reviewer: | + | Expert reviewer: |
Class: XopAP\\ | Class: XopAP\\ | ||
Family: XopAP\\ | Family: XopAP\\ | ||
- | Prototype: XopAP (// | + | Prototype: XopAP (// |
RefSeq ID: [[https:// | RefSeq ID: [[https:// | ||
3D structure: Unknown | 3D structure: Unknown | ||
+ | |||
+ | ===== ===== | ||
===== Biological function ===== | ===== Biological function ===== | ||
=== How discovered? === | === How discovered? === | ||
- | XopAP (XCV3138 in //X. euvesicatoria// | ||
+ | XopAP ([[http:// | ||
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
- | XopAP fused to the AvrBs2 reporter, was shown to translocate into plant cells in an // | ||
+ | XopAP fused to the AvrBs2 reporter, was shown to translocate into plant cells in an // | ||
=== Regulation === | === Regulation === | ||
- | Unknown. In //X. euvesicatoria// | ||
+ | In //X. euvesicatoria// | ||
=== Phenotypes === | === Phenotypes === | ||
- | A // | ||
- | XopAP shares similarity with the //Ralstonia solanacearum// | ||
+ | A // | ||
+ | |||
+ | XopAP was shown to be induced in //X. citri// subsp. //citri// strain 306 in nutrient broth (NB; Jalan //et al//., 2013). | ||
=== Localization === | === Localization === | ||
- | Unknown. Subcellular localization analyses of the //R. solanacearum// | ||
+ | Unknown. Subcellular localization analyses of the //R. solanacearum// | ||
=== Enzymatic function === | === Enzymatic function === | ||
- | Unknown. XopAL contains a putative lipase domain (lipase class 3 family domain; conserved protein domain family PLN03037) in amino acid positions 236-322 (Teper //et al//., 2016). | ||
+ | Unknown. XopAP contains a putative lipase domain (lipase class 3 family domain; conserved protein domain family [[https:// | ||
=== Interaction partners === | === Interaction partners === | ||
+ | |||
Unknown. | Unknown. | ||
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=== In xanthomonads === | === In xanthomonads === | ||
- | Yes (//e.g.,// //X. campestris//, | ||
+ | Yes (//e.g.,// //X. campestris//, | ||
=== In other plant pathogens/ | === In other plant pathogens/ | ||
- | Yes (// | ||
+ | Yes (// | ||
===== References ===== | ===== References ===== | ||
- | Nakano M, Mukaihara T (2018). //Ralstonia solanacearum// | + | Constantin EC, Haegeman A, Van Vaerenbergh J, Baeyen S, Van Malderghem C, Maes M, Cottyn B (2017). Pathogenicity and virulence gene content of // |
+ | |||
+ | Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC, Wang N (2013). Comparative genomic and transcriptome analyses of pathotypes of // | ||
+ | |||
+ | Nakano M, Mukaihara T (2018). //Ralstonia solanacearum// | ||
+ | |||
+ | Peeters N, Carrere S, Anisimova M, Plener L, Cazale AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the type III effector gene set in the //Ralstonia solanacearum// | ||
+ | |||
+ | Peng, Z., Hu, Y., Xie, J., Potnis N, Akhunova A, Jones J, Liu Z, White FJ, Liu S (2016). Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of // | ||
+ | |||
+ | Popov G, Fraiture M, Brunner F, Sessa G (2018). Multiple // | ||
- | Peeters | + | Potnis |
- | Popov G, Fraiture | + | Teper D, Burstein D, Salomon D, Gershovitz |
- | Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification | + | Zhang Y, Teper D, Xu J, Wang N (2019). Stringent response regulators (p)ppGpp and DksA positively regulate virulence and host adaptation |