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bacteria:t3e:xopaq [2020/06/22 09:25] saulburdman [XopAQ] |
bacteria:t3e:xopaq [2020/07/01 10:54] rkoebnik [References] |
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Author: Jose Gadea\\ | Author: Jose Gadea\\ | ||
- | Internal reviewer: Saul Burdman | + | Internal reviewer: Saul Burdman\\ |
Expert reviewer: FIXME | Expert reviewer: FIXME | ||
- | Class: | + | Class: XopAQ\\ |
- | Family: | + | Family: XopAQ\\ |
Prototype: XopAQ (//X. gardneri// (Xg); strain 101 = ATCC 19865)\\ | Prototype: XopAQ (//X. gardneri// (Xg); strain 101 = ATCC 19865)\\ | ||
GenBank ID: [[https:// | GenBank ID: [[https:// | ||
Line 18: | Line 18: | ||
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
- | A functional screen to isolate //Ralstonia solanacearum// | + | A functional screen to isolate //Ralstonia solanacearum// |
=== Regulation === | === Regulation === | ||
- | XopAQ is up-regulated when //X.citri// pv. //citri// 306 and //X.citri// pv. //citri// Aw12879 (restricted to Mexican lime) are grown in XVM2 medium, known to induce | + | XopAQ is up-regulated when //X.citri// pv. //citri// 306 and //X.citri// pv. //citri// Aw12879 (restricted to Mexican lime) were grown in XVM2 (a medium |
=== Phenotypes === | === Phenotypes === | ||
Line 40: | Line 40: | ||
=== In xanthomonads === | === In xanthomonads === | ||
- | Yes. Widely | + | Yes. The effector is widely |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
Yes (// | Yes (// | ||
+ | |||
===== References ===== | ===== References ===== | ||
- | Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016). Whole-Genome Sequences | + | Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016). Whole-genome sequences |
+ | |||
+ | Dalio RJD, Magalhães DM, Rodrigues CM, Arena GD, Oliveira TS, Souza-Neto RR, Picchi SC, Martins PMM, Santos PJC, Maximo HJ, Pacheco IS, De Souza AA, Machado MA (2017). PAMPs, PRRs, effectors and R-genes associated with citrus-pathogen interactions. Ann. Bot. 119: 749-774. DOI: [[https:// | ||
- | Dalio RJD, Magalhães DM, Rodrigues CM, Arena GD, Oliveira TS, Souza-Neto RR, Picchi SC, Martins PMM, Santos PJC, Maximo HJ, Pacheco IS, De Souza AA, Machado MA (2017). PAMPs, PRRs, effectors | + | Escalon A, Javegny S, Vernière C, Noël LD, Vital K, Poussier S, Hajri A, Boureau T, Pruvost O, Arlat M, Gagnevin L (2013). Variations in type III effector repertoires, pathological phenotypes |
- | Escalon A, Javegny | + | Ferreira MASV, Bonneau |
- | Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RLR, Souza EB, Jacques MA (2009). // | + | Garita-Cambronero J (2016). Genómica comparativa de cepas de // |
- | Garita-Cambronero J, Palacio-Bielsa A, López MM, Cubero J (2016a). Comparative Genomic and Phenotypic Characterization of Pathogenic and Non-Pathogenic Strains of // | + | Garita-Cambronero J, Palacio-Bielsa A, Cubero J (2018). // |
- | Garita-Cambronero J (2016b). Doctoral Thesis. Genómica comparativa de cepas de // | + | Garita-Cambronero |
- | Garita-Cambronero J, Palacio-Bielsa A, Cubero J (2018). // | + | Garita-Cambronero J, Sena-Vélez M, Ferragud E, Sabuquillo P, Redondo C, Cubero J (2019). // |
- | Garita-Cambronero J, Sena-Vélez M, Ferragud E, Sabuquillo P, Redondo C, Cubero J (2019). // | + | Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC, Wang N (2013). Comparative genomic and transcriptome analyses of pathotypes of // |
- | Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC, Wang N (2013). Comparative genomic and transcriptome analyses of pathotypes | + | Jibrin MO, Potnis |
- | Jibrin MO, Potnis | + | Mukaihara T, Tamura |
- | Mukaihara T, Tamura | + | Potnis |
- | Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads | + | Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J Jr, Minsavage GV, Dahlbeck D, Akhunova A, Almeida N, Vallad GE, Barak JD, White FF, Miller SA, Ritchie D, Goss E, Bart RS, Setubal JC, Jones JB, Staskawicz BJ (2015). Phylogenomics of // |
- | Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J Jr, Minsavage GV, Dahlbeck D, Akhunova A, Almeida | + | Vancheva T, Lefeuvre P, Bogatzevska |