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bacteria:t3e:xopaq [2020/06/22 09:36] saulburdman [References] |
bacteria:t3e:xopaq [2020/07/03 09:43] rkoebnik |
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Author: Jose Gadea\\ | Author: Jose Gadea\\ | ||
- | Internal reviewer: Saul Burdman | + | Internal reviewer: |
Expert reviewer: FIXME | Expert reviewer: FIXME | ||
- | Class: | + | Class: XopAQ\\ |
- | Family: | + | Family: XopAQ\\ |
Prototype: XopAQ (//X. gardneri// (Xg); strain 101 = ATCC 19865)\\ | Prototype: XopAQ (//X. gardneri// (Xg); strain 101 = ATCC 19865)\\ | ||
GenBank ID: [[https:// | GenBank ID: [[https:// | ||
Line 18: | Line 18: | ||
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
- | A functional screen to isolate //Ralstonia solanacearum// | + | A functional screen to isolate //Ralstonia solanacearum// |
=== Regulation === | === Regulation === | ||
- | XopAQ is up-regulated when //X.citri// pv. //citri// 306 and //X.citri// pv. //citri// Aw12879 (restricted to Mexican lime) are grown in XVM2 medium, known to induce | + | XopAQ is up-regulated when //X.citri// pv. //citri// 306 and //X.citri// pv. //citri// Aw12879 (restricted to Mexican lime) were grown in XVM2 (a medium |
=== Phenotypes === | === Phenotypes === | ||
Line 40: | Line 40: | ||
=== In xanthomonads === | === In xanthomonads === | ||
- | Yes. Widely | + | Yes. The effector is widely |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
Line 46: | Line 46: | ||
===== References ===== | ===== References ===== | ||
- | Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016). Whole-genome sequences of // | + | Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016). Whole-genome sequences of // |
- | Dalio RJD, Magalhães DM, Rodrigues CM, Arena GD, Oliveira TS, Souza-Neto RR, Picchi SC, Martins PMM, Santos PJC, Maximo HJ, Pacheco IS, De Souza AA, Machado MA (2017). PAMPs, PRRs, effectors and R-genes associated with citrus-pathogen interactions. Ann. Bot. 119(5): 749-774. DOI: [[https:// | + | Dalio RJD, Magalhães DM, Rodrigues CM, Arena GD, Oliveira TS, Souza-Neto RR, Picchi SC, Martins PMM, Santos PJC, Maximo HJ, Pacheco IS, De Souza AA, Machado MA (2017). PAMPs, PRRs, effectors and R-genes associated with citrus-pathogen interactions. Ann. Bot. 119: 749-774. DOI: [[https:// |
- | Escalon A, Javegny S, Vernière C, Noël LD, Vital K, Poussier S, Hajri A, Boureau T, Pruvost O, Arlat M, Gagnevin L (2013). Variations in type III effector repertoires, | + | Escalon A, Javegny S, Vernière C, Noël LD, Vital K, Poussier S, Hajri A, Boureau T, Pruvost O, Arlat M, Gagnevin L (2013). Variations in type III effector repertoires, |
- | Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RLR, Souza EB, Jacques MA (2009). // | + | Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RLR, Souza EB, Jacques MA (2009). // |
- | Garita-Cambronero | + | Garita-Cambronero J (2016). Genómica comparativa de cepas de // |
- | Garita-Cambronero J (2016b). Doctoral Thesis. Genómica comparativa de cepas de // | + | Garita-Cambronero |
- | Garita-Cambronero J, Palacio-Bielsa A, Cubero J (2018). // | + | Garita-Cambronero J, Palacio-Bielsa A, López MM, Cubero J (2016). Comparative genomic and phenotypic characterization of pathogenic and non-pathogenic strains of // |
- | Garita-Cambronero J, Sena-Vélez M, Ferragud E, Sabuquillo P, Redondo C, Cubero J (2019). // | + | Garita-Cambronero J, Sena-Vélez M, Ferragud E, Sabuquillo P, Redondo C, Cubero J (2019). // |
- | Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC, Wang N (2013). Comparative genomic and transcriptome analyses of pathotypes of // | + | Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC, Wang N (2013). Comparative genomic and transcriptome analyses of pathotypes of // |
- | Jibrin MO, Potnis N, Timilsina S, Minsavage GV, Vallad GE, Roberts PD, Jones JB, Goss EM (2018). Genomic inference of recombination-mediated evolution in // | + | Jibrin MO, Potnis N, Timilsina S, Minsavage GV, Vallad GE, Roberts PD, Jones JB, Goss EM (2018). Genomic inference of recombination-mediated evolution in // |
- | Mukaihara T, Tamura N, Iwabuchi M (2010). Genome-wide identification of a large repertoire of //Ralstonia solanacearum// | + | Mukaihara T, Tamura N, Iwabuchi M (2010). Genome-wide identification of a large repertoire of //Ralstonia solanacearum// |
- | Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics 12: 146. DOI: [[https:// | + | Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics 12: 146. DOI: [[https:// |
- | Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J Jr, Minsavage GV, Dahlbeck D, Akhunova A, Almeida N, Vallad GE, Barak JD, White FF, Miller SA, Ritchie D, Goss E, Bart RS, Setubal JC, Jones JB, Staskawicz BJ (2015). Phylogenomics of // | + | Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J Jr, Minsavage GV, Dahlbeck D, Akhunova A, Almeida N, Vallad GE, Barak JD, White FF, Miller SA, Ritchie D, Goss E, Bart RS, Setubal JC, Jones JB, Staskawicz BJ (2015). Phylogenomics of // |
- | Vancheva T, Lefeuvre P, Bogatzevska N, Moncheva P, Koebnik R (2015). Draf genome sequences of two Xanthomonas euvesicatoria strains from the Balkan Peninsula. Genome Announc. 3(1): e01528-14. DOI: [[https:// | + | Vancheva T, Lefeuvre P, Bogatzevska N, Moncheva P, Koebnik R (2015). Draf genome sequences of two //Xanthomonas euvesicatoria// strains from the Balkan Peninsula. Genome Announc. 3: e01528-14. DOI: [[https:// |