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bacteria:t3e:xopaq [2020/04/05 18:44] bosis |
bacteria:t3e:xopaq [2020/07/03 09:57] (current) rkoebnik |
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- | Author: Jose Gadea | + | ====== XopAQ ====== |
- | Class: | + | Author: [[https:// |
- | Family: | + | Internal reviewer: [[https:// |
- | Prototype: XopAQ (//X. gardneri (Xg) strain 101 (ATCC 19865//).\\ | + | Expert reviewer: FIXME |
- | GenBank ID: EGD19295.1 (95 aa)\\ | + | |
+ | Class: XopAQ\\ | ||
+ | Family: XopAQ\\ | ||
+ | Prototype: XopAQ (//X. gardneri// (Xg); strain 101 = ATCC 19865)\\ | ||
+ | GenBank ID: [[https:// | ||
3D structure: Unknown | 3D structure: Unknown | ||
- | **Biological function** | + | ===== Biological function |
+ | |||
+ | === How discovered? === | ||
+ | |||
+ | XopAQ was discovered by sequencing the genome of the //X. gardneri// (Xg) strain 101 (Potnis //et al//., 2011). | ||
+ | === (Experimental) evidence for being a T3E === | ||
+ | |||
+ | A functional screen to isolate //Ralstonia solanacearum// | ||
+ | === Regulation === | ||
+ | |||
+ | XopAQ is up-regulated when //X.citri// pv. //citri// 306 and //X.citri// pv. //citri// Aw12879 (restricted to Mexican lime) were grown in XVM2 (a medium that is known to induce expression of //hrp// genes and several effector genes in // | ||
+ | === Phenotypes === | ||
+ | |||
+ | Unknown. | ||
+ | |||
+ | === Localization === | ||
+ | |||
+ | CSS-Palm suite reveals potential myristoylation/ | ||
+ | === Enzymatic function === | ||
+ | |||
+ | Unknown. No known motifs are found in the Rip6 and Rip11 proteins of // | ||
+ | === Interaction partners === | ||
+ | |||
+ | Unknown. | ||
+ | |||
+ | ===== Conservation ===== | ||
+ | |||
+ | === In xanthomonads === | ||
+ | |||
+ | Yes. The effector is widely present in the most agressive citrus canker-causing //X.citri// A strains but also in the AW strain (narrow host range) (Escalon //et al//., 2013; Garita-Cambronero //et al//., 2019), and also in the milder //X. fuscans// B strain, but not in the //X. fuscans// C strain, whic is restricted to //C. aurantifoli// | ||
+ | === In other plant pathogens/ | ||
+ | |||
+ | Yes (// | ||
+ | ===== References ===== | ||
- | //How discovered?// XopAQ was discovered by sequencing the genome | + | Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016). Whole-genome sequences of //Xanthomonas euvesicatoria// strains clarify taxonomy and reveal a stepwise erosion |
- | //(Experimental) evidence for being a T3E:// A functional screen to isolate //Ralstonia solanacearum// | + | Dalio RJD, Magalhães DM, Rodrigues CM, Arena GD, Oliveira TS, Souza-Neto RR, Picchi SC, Martins PMM, Santos PJC, Maximo HJ, Pacheco IS, De Souza AA, Machado MA (2017). PAMPs, PRRs, effectors |
- | //Regulation:// | + | Escalon A, Javegny S, Vernière C, Noël LD, Vital K, Poussier S, Hajri A, Boureau T, Pruvost O, Arlat M, Gagnevin L (2013). Variations in type III effector repertoires, |
- | The //X. arboricola// gene shows a putative plant-inducible promoter box (PIP-BOX) sequence, 67 bp upstream | + | Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RLR, Souza EB, Jacques MA (2009). |
- | //Phenotypes:Unknown// | + | Garita-Cambronero J (2016). Genómica comparativa de cepas de //Xanthomonas arborícola// |
- | //Localization: | + | Garita-Cambronero J, Palacio-Bielsa A, Cubero J (2018). |
- | //Enzymatic function:// Unknown. No known motifs are found in the Rip6 and Rip11 proteins | + | Garita-Cambronero J, Palacio-Bielsa A, López MM, Cubero J (2016). Comparative genomic and phenotypic characterization of pathogenic and non-pathogenic strains of //Xanthomonas arboricola// reveals insights into the infection process |
- | //Interaction partners://Unknown | + | Garita-Cambronero J, Sena-Vélez M, Ferragud E, Sabuquillo P, Redondo C, Cubero J (2019). // |
- | **Conservation** | + | Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC, Wang N (2013). Comparative genomic and transcriptome analyses of pathotypes of // |
- | //In xanthomonads:// | + | Jibrin MO, Potnis N, Timilsina S, Minsavage GV, Vallad GE, Roberts PD, Jones JB, Goss EM (2018). Genomic inference of recombination-mediated evolution |
- | //In other plant pathogens/symbionts://Yes (//Ralstonia).// | + | Mukaihara T, Tamura N, Iwabuchi M (2010). Genome-wide identification of a large repertoire of //Ralstonia solanacearum// type III effector proteins by a new functional screen. Mol. Plant Microbe Interact. 23: 251-262. [[https://doi.org/10.1094/MPMI-23-3-0251|10.1094/MPMI-23-3-0251]] |
- | **References** | + | Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics 12: 146. DOI: [[https:// |
- | - Escalon A, Javegny S, Vernière C, Noël LD, Vital K, Poussier S, Hajri A, Boureau T, Pruvost O, Arlat M, Gagnevin L. Variations in type III effector repertoires, | + | Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J Jr, Minsavage GV, Dahlbeck D, Akhunova A, Almeida N, Vallad GE, Barak JD, White FF, Miller SA, Ritchie D, Goss E, Bart RS, Setubal JC, Jones JB, Staskawicz BJ (2015). Phylogenomics of //Xanthomonas// field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity. Front. Microbiol. 6: 535. DOI: [[https://doi.org/10.3389/fmicb.2015.00535|10.3389/fmicb.2015.00535]] |
- | - Dalio RJD, Magalhães DM, Rodrigues CM, Arena GD, Oliveira TS, Souza-Neto RR, Picchi SC, Martins PMM, Santos PJC, Maximo HJ, Pacheco IS, De Souza AA, Machado MA. PAMPs, PRRs, effectors and R-genes associated with citrus-pathogen interactions. Ann Bot. 2017 Mar 1; | + | |
- | - Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J Jr, | + | |
- | - Ferreira MASV, Bonneau S, Briand M, Cesbron S, Portier P, Darrasse A, Gama MAS, Barbosa MAG, Mariano RLR, Souza EB, Jacques MA. Xanthomonas citri pv. viticola Affecting Grapevine in Brazil: Emergence of a Successful Monomorphic Pathogen. Front Plant Sci. 2019 Apr 18;10:489. doi: 10.3389/fpls.2019.00489. | + | |
- | - Garita-Cambronero J, Sena-Vélez M, Ferragud E, Sabuquillo P, Redondo C, Cubero J. Xanthomonas citri subsp. citri and Xanthomonas arboricola pv. pruni: Comparative analysis of two pathogens producing similar symptoms in different host plants. PLoS One. 2019 Jul 18; | + | |
- | - Garita-Cambronero J, Palacio-Bielsa A, Cubero J. Xanthomonas arboricola pv. pruni, causal agent of bacterial spot of stone fruits and almond: its genomic and phenotypic characteristics in the X. arboricola species context. Mol Plant Pathol. 2018 Sep; | + | |
- | - Garita-Cambronero J, Palacio-Bielsa A, López MM, Cubero J. Comparative Genomic and Phenotypic Characterization of Pathogenic and Non-Pathogenic Strains of Xanthomonas arboricola Reveals Insights into the Infection Process of Bacterial Spot Disease of Stone Fruits. PLoS One. 2016 Aug 29; | + | |
- | - Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB. Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics. 2011 Mar 11;12:146. doi: 10.1186/ | + | |
- | - Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC,Wang N. Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host range. BMC Genomics. 2013 Aug 14;14:551. doi: 10.1186/ | + | |
- | - Jibrin MO, Potnis N, Timilsina S, Minsavage GV, Vallad GE, Roberts PD, Jones JB, Goss EM. Genomic Inference of Recombination-Mediated Evolution in Xanthomonas euvesicatoria and X. perforans. Appl Environ Microbiol. 2018 Jun 18;84(13). pii: e00136-18. doi: 10.1128/ | + | |
- | - Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R. Whole-Genome Sequences of Xanthomonas euvesicatoria Strains Clarify Taxonomy and Reveal a Stepwise Erosion of Type 3 Effectors. Front Plant Sci. 2016 Dec 9;7:1805. doi: 10.3389/fpls.2016.01805. | + | |
- | - Mukaihara T, Tamura N, Iwabuchi M. Genome-wide identification of a large repertoire of Ralstonia solanacearum type III effector proteins by a new functional screen. Mol Plant Microbe Interact. 2010 Mar; | + | |
- | - Garita-Cambronero J. Doctoral Thesis. Genómica comparativa de cepas de // | + | |
+ | Vancheva T, Lefeuvre P, Bogatzevska N, Moncheva P, Koebnik R (2015). Draf genome sequences of two // | ||