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bacteria:t3e:xope1 [2020/07/01 12:03] rkoebnik |
bacteria:t3e:xope1 [2020/07/08 18:51] (current) rkoebnik [XopE1] |
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====== XopE1 ====== | ====== XopE1 ====== | ||
- | Author: Jaime Cubero\\ | + | Author: |
- | Internal reviewer: Ralf Koebnik\\ | + | Internal reviewer: |
Expert reviewer: FIXME | Expert reviewer: FIXME | ||
Class: XopE\\ | Class: XopE\\ | ||
Family: XopE1\\ | Family: XopE1\\ | ||
- | Prototype: XCV0294 (// | + | Prototype: XCV0294 (// |
RefSeq ID: [[https:// | RefSeq ID: [[https:// | ||
Synonym: AvrXacE1 (// | Synonym: AvrXacE1 (// | ||
- | 3D structure: | + | 3D structure: |
===== Biological function ===== | ===== Biological function ===== | ||
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Using RT-PCR analyses, XopE1 from //X. euvesicatoria// | Using RT-PCR analyses, XopE1 from //X. euvesicatoria// | ||
+ | |||
+ | Transcriptome analysis (RNA-seq) and qRT-PCR revealed that // | ||
=== Phenotypes === | === Phenotypes === | ||
- | // | + | // |
=== Localization === | === Localization === | ||
- | XopE1 fused to gfp in a binary vector under control of the Cauliflower mosaic virus 35S promoter expressed in // | + | XopE1 fused to GFP reporter |
=== Enzymatic function === | === Enzymatic function === | ||
- | XopE1 belongs to the HopX effector family, | + | XopE1 belongs to the HopX effector family, |
=== Interaction partners === | === Interaction partners === | ||
- | XopE1 was found to physically interact with tomato 14-3-3s (TFT) and is also associated | + | XopE1 was found to physically interact with tomato 14-3-3s (TFT) (Dubrow //et al.//, 2018). In addition, XopE1 was predicted |
===== Conservation ===== | ===== Conservation ===== | ||
=== In xanthomonads === | === In xanthomonads === | ||
- | Yes (//e.g.//, //X. citri, X. campestris, X. phaseoli, X. alfalfa, X. euvesicatoria//). | + | Yes (//e.g.//, //X. alfalfa, X. citri, X. euvesicatoria// |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
- | Yes (// | + | Yes (// |
===== References ===== | ===== References ===== | ||
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Thieme F, Szczesny R, Urban A, Kirchner O, Hause G, Bonas U (2007). New type III effectors from // | Thieme F, Szczesny R, Urban A, Kirchner O, Hause G, Bonas U (2007). New type III effectors from // | ||
+ | |||
+ | Wei C, Ding T, Chang C, Yu C, Li X, Liu Q (2019). Global regulator PhoP is necessary for motility, biofilm formation, exoenzyme production and virulence of // | ||