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--- bacteria:t3e:xopk [2020/07/08 19:23]
rkoebnik [References]
+++ bacteria:t3e:xopk [2020/07/08 19:31]
rkoebnik [Biological function]
@@ Line 1: / Line 1: @@
+====== XopK ======
+Author: [[https://www.researchgate.net/profile/Joel_Pothier2|Joël F. Pothier]] & Trainees from the 2<sup>nd</sup>  EuroXanth Training School ([[https://www.researchgate.net/profile/Amandine_Cunty|Amandine Cunty]], [[https://www.researchgate.net/profile/Filip_Gazdik|Filip Gazdik]], [[https://www.researchgate.net/profile/Leonor_Martins|Leonor Martins]], Cinzia Van Malderghem, Esther Van Veen)\\
+Internal reviewer: [[https://www.researchgate.net/profile/Alexandre_Menezes6|Alexandre B. de Menezes]]\\
+Expert reviewer: FIXME
+Class: XopK\\
+Family: XopK\\
+Prototype: XOO1669 (//Xanthomonas oryzae// pv. //oryzae//; strain T7174R)\\
+RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_027703763.1|WP_027703763.1]] (843 aa)\\
+D structure: Unknown
 ===== Biological function =====
@@ Line 34: / Line 46: @@
 === In xanthomonads ===
-Yes (based on EDGAR; e.g., //X. oryzae//  pvs. oryzae and oryzicola, //X. citri//  pvs. citri, malvacearum, fuscans and glycines, //X. euvesicatoria//, //X. perforans//, //X. campestris//, //X. cynarae//  pv. gardneri, //X. fragariae//, //X. translucens//, //X. vesicatoria//). In addition to the taxa above, BLAST against the GenBank nt database also shows matches to// X. arboricola, X. hortorum, X. hyacinthi//.
+Yes (based on EDGAR; e.g., //X. oryzae// pvs. oryzae and oryzicola, //X. citri// pvs. citri, malvacearum, fuscans and glycines, //X. euvesicatoria//, //X. perforans//, //X. campestris//, //X. cynarae// pv. gardneri, //X. fragariae//, //X. translucens//, //X. vesicatoria//). In addition to the taxa above, BLAST against the GenBank nt database also shows matches to// X. arboricola, X. hortorum, X. hyacinthi//.
 === In other plant pathogens/symbionts ===
-Yes (e.g., //Acidovorax//  spp. with 42% AAI). BLAST against GenBank nt DB suggests that //Acidovorax s//pp. is the only group in which this gene may be present outside Xanthomonadaceae.
+Yes (e.g., //Acidovorax// spp. with 42% AAI). BLAST against GenBank nt DB suggests that //Acidovorax s//pp. is the only group in which this gene may be present outside Xanthomonadaceae.
 ===== References =====
 Furutani A, Nakayama T, Ochiai H, Kaku H, Kubo Y, Tsuge S (2006). Identification of novel HrpXo regulons preceded by two //cis//-acting elements, a plant-inducible promoter box and a -10 box-like sequence, from the genome database of //Xanthomonas oryzae// pv. oryzae. FEMS Microbiol. Lett. 259: 133-141. DOI: [[https://doi.org/10.1111/j.1574-6968.2006.00265.x|10.1111/j.1574-6968.2006.00265.x]]
-Furutani A, Takaoka M, Sanada H, Noguchi Y, Oku T, Tsuno K, Ochiai H, Tsuge S (2009). Identification of novel type III secretion effectors in //Xanthomonas oryzae// pv. //oryzae//. Mol. Plant Microbe Interact. 22: 96-106. DOI: [[https://doi.org/10.1094/MPMI-22-1-0096|10.1094/MPMI-22-1-0096]]
+Furutani A, Takaoka M, Sanada H, Noguchi Y, Oku T, Tsuno K, Ochiai H, Tsuge S (2009). Identification of novel type III secretion effectors in //Xanthomonas oryzae// pv. //oryzae//. Mol. Plant Microbe Interact. 22: 96-106. DOI: [[https://doi.org/10.1094/MPMI-22-1-0096|10.1094/MPMI-22-1-0096]] FIXME  → Needs to be added to "Experimental evidence"
 Liu Y, Long J, Shen D, Song C (2016). //Xanthomonas oryzae// pv. //oryzae// requires H-NS-family protein XrvC to regulate virulence during rice infection. FEMS Microbiol. Lett. 363: fnw067. DOI: [[https://doi.org/10.1093/femsle/fnw067|10.1093/femsle/fnw067]]

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