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bacteria:t3e:xopk [2020/07/08 19:31]
rkoebnik [Biological function] 		bacteria:t3e:xopk [2020/12/06 21:50]
rbart_danforthcenter.org
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 Author: [[https://www.researchgate.net/profile/Joel_Pothier2|Joël F. Pothier]] & Trainees from the 2<sup>nd</sup>  EuroXanth Training School ([[https://www.researchgate.net/profile/Amandine_Cunty|Amandine Cunty]], [[https://www.researchgate.net/profile/Filip_Gazdik|Filip Gazdik]], [[https://www.researchgate.net/profile/Leonor_Martins|Leonor Martins]], Cinzia Van Malderghem, Esther Van Veen)\\ Author: [[https://www.researchgate.net/profile/Joel_Pothier2|Joël F. Pothier]] & Trainees from the 2<sup>nd</sup>  EuroXanth Training School ([[https://www.researchgate.net/profile/Amandine_Cunty|Amandine Cunty]], [[https://www.researchgate.net/profile/Filip_Gazdik|Filip Gazdik]], [[https://www.researchgate.net/profile/Leonor_Martins|Leonor Martins]], Cinzia Van Malderghem, Esther Van Veen)\\
 Internal reviewer: [[https://www.researchgate.net/profile/Alexandre_Menezes6|Alexandre B. de Menezes]]\\ Internal reviewer: [[https://www.researchgate.net/profile/Alexandre_Menezes6|Alexandre B. de Menezes]]\\
-Expert reviewer: FIXME+Expert reviewer: Rebecca Bart
  
 Class: XopK\\ Class: XopK\\
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 === (Experimental) evidence for being a T3E === === (Experimental) evidence for being a T3E ===
  
-Mutation of a putative ubiquitin-conjugation enzyme (E2) binding site abolished XopK-induced degradation of rice somatic receptor kinase 2 (OsSERK2) and compromised XopK-dependent virulence (Qin //et al//., 2018).+Mutation of a putative ubiquitin-conjugation enzyme (E2) binding site abolished XopK-induced degradation of rice somatic receptor kinase 2 (OsSERK2) and compromised XopK-dependent virulence (Qin //et al//., 2018). Expression of XopK is HrpX-dependent (Furutani //et al//., 2006) and was observed to translocate using a Cya reporter system (Furutani //et al//., 2009).
 === Regulation === === Regulation ===
  
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 === In xanthomonads === === In xanthomonads ===
  
-Yes (based on EDGAR; e.g., //X. oryzae// pvs. oryzae and oryzicola, //X. citri// pvs. citri, malvacearum, fuscans and glycines, //X. euvesicatoria//, //X. perforans//, //X. campestris//, //X. cynarae// pv. gardneri, //X. fragariae//, //X. translucens//, //X. vesicatoria//). In addition to the taxa above, BLAST against the GenBank nt database also shows matches to// X. arboricola, X. hortorum, X. hyacinthi//.+Yes (based on EDGAR; e.g., //X. oryzae//  pvs. oryzae and oryzicola, //X. citri//  pvs. citri, malvacearum, fuscans and glycines, //X. euvesicatoria//, //X. perforans//, //X. campestris//, //X. cynarae//  pv. gardneri, //X. fragariae//, //X. translucens//, //X. vesicatoria//). In addition to the taxa above, BLAST against the GenBank nt database also shows matches to// X. arboricola, X. hortorum, X. hyacinthi//. 
 === In other plant pathogens/symbionts === === In other plant pathogens/symbionts ===
  
-Yes (e.g., //Acidovorax// spp. with 42% AAI). BLAST against GenBank nt DB suggests that //Acidovorax s//pp. is the only group in which this gene may be present outside Xanthomonadaceae.+Yes (e.g., //Acidovorax//  spp. with 42% AAI). BLAST against GenBank nt DB suggests that //Acidovorax s//pp. is the only group in which this gene may be present outside Xanthomonadaceae. 
 ===== References ===== ===== References =====
  
-Furutani A, Nakayama T, Ochiai H, Kaku H, Kubo Y, Tsuge S (2006). Identification of novel HrpXo regulons preceded by two //cis//-acting elements, a plant-inducible promoter box and a -10 box-like sequence, from the genome database of //Xanthomonas oryzae// pv. oryzae. FEMS Microbiol. Lett. 259: 133-141. DOI: [[https://doi.org/10.1111/j.1574-6968.2006.00265.x|10.1111/j.1574-6968.2006.00265.x]]+Furutani A, Nakayama T, Ochiai H, Kaku H, Kubo Y, Tsuge S (2006). Identification of novel HrpXo regulons preceded by two //cis//-acting elements, a plant-inducible promoter box and a -10 box-like sequence, from the genome database of //Xanthomonas oryzae//  pv. oryzae. FEMS Microbiol. Lett. 259: 133-141. DOI: [[https://doi.org/10.1111/j.1574-6968.2006.00265.x|10.1111/j.1574-6968.2006.00265.x]]
  
-Furutani A, Takaoka M, Sanada H, Noguchi Y, Oku T, Tsuno K, Ochiai H, Tsuge S (2009). Identification of novel type III secretion effectors in //Xanthomonas oryzae// pv. //oryzae//. Mol. Plant Microbe Interact. 22: 96-106. DOI: [[https://doi.org/10.1094/MPMI-22-1-0096|10.1094/MPMI-22-1-0096]] FIXME  → Needs to be added to "Experimental evidence"+Furutani A, Takaoka M, Sanada H, Noguchi Y, Oku T, Tsuno K, Ochiai H, Tsuge S (2009). Identification of novel type III secretion effectors in //Xanthomonas oryzae//  pv. //oryzae//. Mol. Plant Microbe Interact. 22: 96-106. DOI: [[https://doi.org/10.1094/MPMI-22-1-0096|10.1094/MPMI-22-1-0096]] FIXME  → Needs to be added to "Experimental evidence"
  
-Liu Y, Long J, Shen D, Song C (2016). //Xanthomonas oryzae// pv. //oryzae// requires H-NS-family protein XrvC to regulate virulence during rice infection. FEMS Microbiol. Lett. 363: fnw067. DOI: [[https://doi.org/10.1093/femsle/fnw067|10.1093/femsle/fnw067]]+Liu Y, Long J, Shen D, Song C (2016). //Xanthomonas oryzae//  pv. //oryzae//  requires H-NS-family protein XrvC to regulate virulence during rice infection. FEMS Microbiol. Lett. 363: fnw067. DOI: [[https://doi.org/10.1093/femsle/fnw067|10.1093/femsle/fnw067]]
  
 Mutka AM, Fentress SJ, Sher SW, Berry JC, Pretz C, Nusinow DA, Bart R (2016). Quantitative, image-based phenotyping methods provide insight into spatial and temporal dimensions of plant disease. Plant Physiol. 172: 650-660. DOI: [[https://doi.org/10.1104/pp.16.00984|10.1104/pp.16.00984]] Mutka AM, Fentress SJ, Sher SW, Berry JC, Pretz C, Nusinow DA, Bart R (2016). Quantitative, image-based phenotyping methods provide insight into spatial and temporal dimensions of plant disease. Plant Physiol. 172: 650-660. DOI: [[https://doi.org/10.1104/pp.16.00984|10.1104/pp.16.00984]]
  
-Qin J, Zhou X, Sun L, Wang K, Yang F, Liao H, Rong W, Yin J, Chen H, Chen X, Zhang J (2018). The //Xanthomonas// effector XopK harbours E3 ubiquitin-ligase activity that is required for virulence. New Phytol. 220: 219-231. DOI: [[https://doi.org/10.1111/nph.15287|10.1111/nph.15287]]+Qin J, Zhou X, Sun L, Wang K, Yang F, Liao H, Rong W, Yin J, Chen H, Chen X, Zhang J (2018). The //Xanthomonas//  effector XopK harbours E3 ubiquitin-ligase activity that is required for virulence. New Phytol. 220: 219-231. DOI: [[https://doi.org/10.1111/nph.15287|10.1111/nph.15287]]
  
-Schulze S, Kay S, Büttner D, Egler M, Eschen-Lippold L, Hause G, Krüger A, Lee J, Müller O, Scheel D, Szczesny R, Thieme F, Bonas U (2012). Analysis of new type III effectors from //Xanthomonas// uncovers XopB and XopS as suppressors of plant immunity. New Phytol. 195: 894-911. DOI: [[https://doi.org/10.1111/j.1469-8137.2012.04210.x|10.1111/j.1469-8137.2012.04210.x]]+Schulze S, Kay S, Büttner D, Egler M, Eschen-Lippold L, Hause G, Krüger A, Lee J, Müller O, Scheel D, Szczesny R, Thieme F, Bonas U (2012). Analysis of new type III effectors from //Xanthomonas//  uncovers XopB and XopS as suppressors of plant immunity. New Phytol. 195: 894-911. DOI: [[https://doi.org/10.1111/j.1469-8137.2012.04210.x|10.1111/j.1469-8137.2012.04210.x]]
  
-Song C, Yang B (2010). Mutagenesis of 18 type III effectors reveals virulence function of XopZ<sub>PXO99</sub> in //Xanthomonas oryzae// pv. oryzae. Mol. Plant Microbe Interact. 23: 893-902. DOI: [[https://doi.org/10.1094/MPMI-23-7-0893|10.1094/MPMI-23-7-0893]]+Song C, Yang B (2010). Mutagenesis of 18 type III effectors reveals virulence function of XopZ<sub>PXO99</sub>  in //Xanthomonas oryzae//  pv. oryzae. Mol. Plant Microbe Interact. 23: 893-902. DOI: [[https://doi.org/10.1094/MPMI-23-7-0893|10.1094/MPMI-23-7-0893]]
  
bacteria/t3e/xopk.txt · Last modified: 2020/12/06 21:56 by rbart_danforthcenter.org

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