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bacteria:t3e:xopl [2020/07/03 17:29] rkoebnik |
bacteria:t3e:xopl [2022/07/13 18:14] (current) rkoebnik [Biological function] |
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Class: XopL\\ | Class: XopL\\ | ||
Family: XopL\\ | Family: XopL\\ | ||
- | Prototype: | + | Prototype: |
RefSeq ID: [[https:// | RefSeq ID: [[https:// | ||
- | Examples of other sequences: XopL< | + | Examples of other sequences: XopL< |
- | 3D structure: Full-length XopL< | + | 3D structure: |
===== Biological function ===== | ===== Biological function ===== | ||
Line 23: | Line 24: | ||
=== Regulation === | === Regulation === | ||
- | XopL< | + | The //xopL// < |
qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //xopL//, were significantly reduced in the // | qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //xopL//, were significantly reduced in the // | ||
+ | |||
+ | The expression of //xopL// < | ||
=== Phenotypes === | === Phenotypes === | ||
- | The T3Es XopL< | + | * XopL< |
+ | * In contrast, XopL< | ||
+ | * XopL< | ||
+ | * XopL< | ||
+ | * Transient expression of XopL, led to a nearly complete elimination of stromules and the relocation of plastids to the nucleus and further characterization of XopL revealed that the E3 ligase activity is essential for two plastid phenotypes | ||
+ | * XopL< | ||
+ | * XopL< | ||
+ | * // | ||
=== Localization === | === Localization === | ||
Possibly plasma membrane. The transiently expressed XopL< | Possibly plasma membrane. The transiently expressed XopL< | ||
+ | |||
=== Enzymatic function === | === Enzymatic function === | ||
- | E3 ubiquitin ligase activity. | + | E3 ubiquitin ligase activity |
=== Interaction partners === | === Interaction partners === | ||
- | Unknown. | + | XopL< |
===== Conservation ===== | ===== Conservation ===== | ||
Line 44: | Line 55: | ||
=== In xanthomonads === | === In xanthomonads === | ||
- | Yes in // | + | Yes (//e.g.//, //X. euvesicatoria//, |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
Line 50: | Line 61: | ||
===== References ===== | ===== References ===== | ||
+ | |||
+ | Adlung N (2016). Charakterisierung der Avirulenzaktivität von XopQ und Identifizierung möglicher Interaktoren von XopL aus // | ||
Erickson JL, Adlung N, Lampe C, Bonas U, Schattat MH (2018). The // | Erickson JL, Adlung N, Lampe C, Bonas U, Schattat MH (2018). The // | ||
Jiang W, Jiang BL, Xu RQ, Huang JD, Wei HY, Jiang GF, Cen WJ, Liu J, Ge YY, Li GH, Su LL, Hang XH, Tang DJ, Lu GT, Feng JX, He YQ, Tang JL (2009). Identification of six type III effector genes with the PIP box in // | Jiang W, Jiang BL, Xu RQ, Huang JD, Wei HY, Jiang GF, Cen WJ, Liu J, Ge YY, Li GH, Su LL, Hang XH, Tang DJ, Lu GT, Feng JX, He YQ, Tang JL (2009). Identification of six type III effector genes with the PIP box in // | ||
+ | |||
+ | Leong JX, Raffeiner M, Spinti D, Langin G, Franz-Wachtel M, Guzman AR, Kim JG, Pandey P, Minina AE, Macek B, Hafrén A, Bozkurt TO, Mudgett MB, Börnke F, Hofius D, Üstün S (2022). A bacterial effector counteracts host autophagy by promoting degradation of an autophagy component. EMBO J. 41: e110352. DOI: [[https:// | ||
Liu Y, Long J, Shen D, Song C (2016). // | Liu Y, Long J, Shen D, Song C (2016). // |