diagnostics:dna_protocols
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diagnostics:dna_protocols [2022/05/05 08:55] rkoebnik [References] |
diagnostics:dna_protocols [2022/08/12 17:21] (current) rkoebnik [Table] |
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| **Main protocols described for regulated xanthomonads based on amplification of specific target DNAs.** | **Main protocols described for regulated xanthomonads based on amplification of specific target DNAs.** | ||
| - | ^ Disease | + | ^ Disease |
| - | |Onion bacterial blight |//X. euvesicatoria// | + | | Onion bacterial blight |
| - | |Citrus bacterial canker |//X. citri// pv. //citri// \\ //X. aurantifolii// | + | | Citrus bacterial canker |
| - | |Bacterial spot of stone fruits, walnut blight, hazelnut blight |//X. arboricola// | + | | Bacterial spot of stone fruits, walnut blight, hazelnut blight |
| - | |Bacterial leaf blight and bacterial leaf streak of rice |//X. oryzae// pvs. //oryzae// and // | + | | Bacterial leaf blight and bacterial leaf streak of rice |
| - | |Bacterial spot of tomato and sweet pepper |//X. euvesicatoria// | + | | Bacterial spot of tomato and sweet pepper |
| - | |Bacterial angular leaf spot of strawberry |//X. fragariae// | + | | Bacterial angular leaf spot of strawberry |
| - | |Bacterial blight of anthurium and other aroids |//X. phaseoli// pv. // | + | | Bacterial blight of anthurium and other aroids |
| - | |Bacterial leaf spot of poinsettia |//X. axonopodis// | + | | Bacterial leaf spot of poinsettia |
| - | |Bacterial leaf streak |//X. translucens// | + | | Bacterial leaf streak |
| - | |Common blight of bean |//X. phaseoli// pv. phaseoli, \\ //X. citri// pv. // | + | | Common blight of bean |
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| Araújo ER, Ferreira MASV, Quezado-Duval AM (2013). Specific primers for // | Araújo ER, Ferreira MASV, Quezado-Duval AM (2013). Specific primers for // | ||
| - | Audy P (1996). A rapid and sensitive PCR-based assay for concurrent detection of bacteria causing common and halo blights in bean seed. Phytopathology 86: 361-366. DOI: [[https:// | + | Audy P, Braat CE, Saindon G, Huang HC, Laroche A (1996). A rapid and sensitive PCR-based assay for concurrent detection of bacteria causing common and halo blights in bean seed. Phytopathology 86: 361-366. DOI: [[https:// |
| Back CG, Lee SY, Lee BJ, Yea MC, Kim SM, Kang IK, Cha JS, Jung HY (2015). Development of a species-specific PCR assay for three // | Back CG, Lee SY, Lee BJ, Yea MC, Kim SM, Kang IK, Cha JS, Jung HY (2015). Development of a species-specific PCR assay for three // | ||
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| Bühlmann A, Pothier JF, Tomlinson JA, Frey JE, Boonham N, Smits THM, Duffy B (2013). Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic // | Bühlmann A, Pothier JF, Tomlinson JA, Frey JE, Boonham N, Smits THM, Duffy B (2013). Genomics-informed design of loop-mediated isothermal amplification for detection of phytopathogenic // | ||
| - | Chabirand A, Jouen E, Pruvost O, Chiroleu F, Hostachy B, Bergsma-Vlami M, Bianchi G, Cozzolino L, Elphinstone J, Holeva M et al. (2014). Comparative and collaborative studies for the validation of a nested PCR for the detection of // | + | Chabirand A, Jouen E, Pruvost O, Chiroleu F, Hostachy B, Bergsma-Vlami M, Bianchi G, Cozzolino L, Elphinstone J, Holeva M, Manole F, Martini P, Matoušková H, Minatchy J, Op de Beeck G, Poliakoff F, Sigillo L, Siverio F, Van Vaerenbergh J, Laurentie M, Robène-Soustrade I (2014). Comparative and collaborative studies for the validation of a nested PCR for the detection of // |
| - | Cho MS, Kang MJ, Kim CK, Seol YJ, Hahn JH, Park SC, Hwang DJ, Ahn TY, Park DH, Lim CK et al. (2011). Sensitive and specific detection of // | + | Cho MS, Kang MJ, Kim CK, Seol YJ, Hahn JH, Park SC, Hwang DJ, Ahn TY, Park DH, Lim CK, Park DS (2011). Sensitive and specific detection of // |
| Coletta-Filho HD, Takita MA, De Souza AA, Neto JR, Destéfano SAL, Hartung JS, Machado MA (2006). Primers based on the //rpf// gene region provide improved detection of // | Coletta-Filho HD, Takita MA, De Souza AA, Neto JR, Destéfano SAL, Hartung JS, Machado MA (2006). Primers based on the //rpf// gene region provide improved detection of // | ||
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| Cubero J, Graham JH (2005). Quantitative real-time polymerase chain reaction for bacterial enumeration and allelic discrimination to differentiate // | Cubero J, Graham JH (2005). Quantitative real-time polymerase chain reaction for bacterial enumeration and allelic discrimination to differentiate // | ||
| - | Cui Z, Ojaghian MR, Tao Z, Kakar KU, Zeng J, Zhao W, Duan Y, Vera Cruz CM, Li B, Zhu B, et al. (2016). Multiplex PCR assay for simultaneous detection of six major bacterial pathogens of rice. J. Appl. Microbiol.120, | + | Cui Z, Ojaghian MR, Tao Z, Kakar KU, Zeng J, Zhao W, Duan Y, Vera Cruz CM, Li B, Zhu B, Xie G (2016). Multiplex PCR assay for simultaneous detection of six major bacterial pathogens of rice. J. Appl. Microbiol.120, |
| De Paiva BAR, Wendland A, Teixeira NC, Ferreira MASV (2020). Rapid detection of // | De Paiva BAR, Wendland A, Teixeira NC, Ferreira MASV (2020). Rapid detection of // | ||
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| Fernandes C, Albuquerque P, Sousa R, Cruz L, Tavares F (2017). Multiple DNA markers for identification of // | Fernandes C, Albuquerque P, Sousa R, Cruz L, Tavares F (2017). Multiple DNA markers for identification of // | ||
| - | Fonseca, NP, Felestrino ÉB, Caneschi WL, Sanchez AB, CordeiroIF, Lemes CGC, Assis RAB, Carvalho FMS, Ferro JA, Varani AM et al. (2019). Detection and identification of // | + | Fonseca, NP, Felestrino ÉB, Caneschi WL, Sanchez AB, CordeiroIF, Lemes CGC, Assis RAB, Carvalho FMS, Ferro JA, Varani AM, Belasque J, Setubal JC, Telles GP, Aguena DS, Almeida NF, Moreira LM (2019). Detection and identification of // |
| Garita-Cambronero J, Palacio-Bielsa A, López MM, Cubero J (2017). Pan-genomic analysis permits differentiation of virulent and non-virulent strains of // | Garita-Cambronero J, Palacio-Bielsa A, López MM, Cubero J (2017). Pan-genomic analysis permits differentiation of virulent and non-virulent strains of // | ||
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| Gétaz M, Bühlmann A, Schneeberger PHH, Van Malderghem C, Duffy B, Maes M, Pothier JF, Cottyn B (2017). A diagnostic tool for improved detection of // | Gétaz M, Bühlmann A, Schneeberger PHH, Van Malderghem C, Duffy B, Maes M, Pothier JF, Cottyn B (2017). A diagnostic tool for improved detection of // | ||
| - | Hartung J (1996). Rapid and sensitive colorimetric detection of // | + | Hartung J, Pruvost OP, Villemot I, Alvarez A (1996). Rapid and sensitive colorimetric detection of // |
| Hartung JS, Pooler MR (1997). Immunocapture and multiplexed-PCR assay for // | Hartung JS, Pooler MR (1997). Immunocapture and multiplexed-PCR assay for // | ||
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| Robène I, Perret M, Jouen E, Escalon A, Maillot MV, Chabirand A, Moreau A, Laurent A, Chiroleu F, Pruvost O (2015). Development and validation of a real-time quantitative PCR assay to detect // | Robène I, Perret M, Jouen E, Escalon A, Maillot MV, Chabirand A, Moreau A, Laurent A, Chiroleu F, Pruvost O (2015). Development and validation of a real-time quantitative PCR assay to detect // | ||
| - | Robène I, Maillot-Lebon V, Chabirand A, Moreau A, Becker N, Moumène A, Rieux A, Campos P, Gagnevin L, Gaudeul M, et al. (2020). Development and comparative validation of genomic-driven PCR-based assays to detect // | + | Robène I, Maillot-Lebon V, Chabirand A, Moreau A, Becker N, Moumène A, Rieux A, Campos P, Gagnevin L, Gaudeul M, Baider C, Chiroleu F, Pruvost O (2020). Development and comparative validation of genomic-driven PCR-based assays to detect // |
| Robène-Soustrade I, Laurent P, Gagnevin L, Jouen E, Pruvost O (2006). Specific detection of // | Robène-Soustrade I, Laurent P, Gagnevin L, Jouen E, Pruvost O (2006). Specific detection of // | ||
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| Webber JB, Putnam M, Serdani M, Pscheidt JW, Wiman NG, Stockwell VO (2020). Characterization of isolates of // | Webber JB, Putnam M, Serdani M, Pscheidt JW, Wiman NG, Stockwell VO (2020). Characterization of isolates of // | ||
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| + | Webster J, Kehoe MA, Nogarotto E, Falconer L, Donovan NJ, Chapman TA (2022). Using genomics to design a pathovar-specific loop-mediated isothermal amplification (LAMP) assay, for the improved detection of // | ||
| + | |||
| + | Zhu Z, Li R, Zhang H, Wang J, Lu Y, Zhang D, Yang L (2022). PAM-free loop-mediated isothermal amplification coupled with CRISPR/ | ||
| ===== Further reading ===== | ===== Further reading ===== | ||
diagnostics/dna_protocols.1651733751.txt.gz · Last modified: 2022/05/05 08:55 by rkoebnik
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