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--- diagnostics:dna_protocols [2022/07/13 15:50]
rkoebnik [Table]
+++ diagnostics:dna_protocols [2022/08/12 17:21] (current)
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 | Citrus bacterial canker                                         | //X. citri// pv. //citri// \\ //X. aurantifolii// pathotypes B and C                                                       | [[https://doi.org/10.1094/Phyto-86-95|Hartung (1996)]], \\  [[https://doi.org/10.1128/AEM.68.3.1257-1264.2002|Cubero (2002)]], \\  [[https://doi.org/10.1111/j.1365-2672.2005.02787.x|Coletta-Filho (2006)]], \\  [[https://doi.org/10.1016/j.micres.2005.07.005|Suk Park (2006)]], \\  [[https://doi.org/10.1111/j.1365-3059.2010.02390.x|Kositcharoenkul (2011)]], \\  [[https://doi.org/10.7717/peerj.7676|Fonseca (2019)]]               | [[https://doi.org/10.1094/PHYTO.2004.94.1.61|Mavrodieva (2004)]], \\ [[https://doi.org/10.1094/PHYTO-95-1333|Cubero (2005)]], \\ [[https://doi.org/10.1186/s12866-020-01972-8|Robène (2020)]]                   | [[https://doi.org/10.1186/1471-2180-10-176|Rigano (2010)]], \\ [[https://doi.org/10.3390/microorganisms10061153|Webster (2022)]]                                                                                                             |
 | Bacterial spot of stone fruits, walnut blight, hazelnut blight  | //X. arboricola// pvs. //pruni//, //corylina// and //juglandis//                                                           | [[https://doi.org/10.1007/s12275-010-0072-3|Park (2010)]], \\  [[https://doi.org/10.1094/PDIS-10-16-1481-RE|Fernandes (2017)]], \\  [[https://doi.org/10.1016/j.mimet.2019.03.003|Jouen (2019)]], \\  [[https://doi.org/10.1007/s42161-020-00505-6|Webber (2020)]]                                                                                                                                                                           | [[https://doi.org/10.1128/AEM.01593-10|Palacio-Bielsa (2011)]], \\  [[https://doi.org/10.3389/fmicb.2017.00573|Garita-Cambronero (2017)]], \\  [[https://doi.org/10.1094/PDIS-12-18-2253-RE|Martins (2019)]]    | [[https://doi.org/10.1111/j.1365-3059.2012.02654.x|Bühlmann (2013)]], \\  [[https://doi.org/10.5423/PPJ.OA.07.2019.0197|Li (2021)]]                                                                                                          |
-| Bacterial leaf blight and bacterial leaf streak of rice         | //X. oryzae// pvs. //oryzae// and //oryzicola//                                                                            | [[https://doi.org/10.1007/s002530100641|Sakthivel (2001)]], \\  [[https://pubmed.ncbi.nlm.nih.gov/18852502/|Kang (2008)]], \\  [[https://doi.org/10.1094/PDIS-94-3-0311|Lang (2010)]], \\  [[https://doi.org/10.1094/PDIS-06-10-0399|Cho (2011)]], \\  [[https://doi.org/10.1016/S2095-3119(12)60047-1|Shen (2012)]], \\  [[https://doi.org/10.3389/fmicb.2015.00791|Singhal (2015)]], \\  [[https://doi.org/10.1111/jam.13094|Cui (2016)]]  | [[https://doi.org/10.1094/PDIS-06-10-0399|Cho (2011)]], \\  [[https://doi.org/10.1016/j.cropro.2012.04.014|Kang (2012)]]                                                                                        | [[https://doi.org/10.1128/AEM.00274-14|Lang (2014)]]                                                                                                                                                                                         |
+| Bacterial leaf blight and bacterial leaf streak of rice         | //X. oryzae// pvs. //oryzae// and //oryzicola//                                                                            | [[https://doi.org/10.1007/s002530100641|Sakthivel (2001)]], \\  [[https://pubmed.ncbi.nlm.nih.gov/18852502/|Kang (2008)]], \\  [[https://doi.org/10.1094/PDIS-94-3-0311|Lang (2010)]], \\  [[https://doi.org/10.1094/PDIS-06-10-0399|Cho (2011)]], \\  [[https://doi.org/10.1016/S2095-3119(12)60047-1|Shen (2012)]], \\  [[https://doi.org/10.3389/fmicb.2015.00791|Singhal (2015)]], \\  [[https://doi.org/10.1111/jam.13094|Cui (2016)]]  | [[https://doi.org/10.1094/PDIS-06-10-0399|Cho (2011)]], \\  [[https://doi.org/10.1016/j.cropro.2012.04.014|Kang (2012)]]                                                                                        | [[https://doi.org/10.1128/AEM.00274-14|Lang (2014)]], \\ [[https://doi.org/10.1016/j.bios.2022.114076|Zhu (2022)]]                                                                                                                           |
 | Bacterial spot of tomato and sweet pepper                       | //X. euvesicatoria// pvs. //euvesicatoria// and //perforans//, \\ //X. hortorum// pv. //gardneri//, \\ //X. vesicatoria//  | [[https://doi.org/10.1111/j.1472-765X.2009.02690.x|Moretti (2009)]], \\  [[https://doi.org/10.1111/j.1365-2672.2012.05431.x|Araújo (2011)]], \\  [[https://doi.org/10.1007/s10658-013-0225-4|Araújo (2013)]], \\  [[https://doi.org/10.1016/j.cropro.2012.08.008|Beran (2013)]], \\  [[https://doi.org/10.17660/ActaHortic.2009.808.13|Koenraadt (2019)]], \\  [[https://doi.org/10.1016/j.cropro.2019.104978|Pečenka (2020)]]               | [[https://doi.org/10.1094/PDIS-09-15-1085-RE|Strayer (2016)]], \\  [[https://doi.org/10.1016/j.cropro.2019.104978|Pečenka (2020)]]                                                                              | [[https://doi.org/10.1038/s41598-018-32295-4|Larrea-Sarmiento (2018)]], \\  [[https://doi.org/10.1094/PHYTO-03-18-0101-R|Strayer-Scherer (2019)]], \\  [[https://doi.org/10.3390/microorganisms8091301|Stehlíková (2020)]]                   |
 | Bacterial angular leaf spot of strawberry                       | //X. fragariae//                                                                                                           | [[https://doi.org/10.17660/ActaHortic.1997.439.136|Hartung (1997)]], \\  [[https://agris.fao.org/agris-search/search.do?recordID=IT2001060012|Cruz (1999)]], \\  [[https://doi.org/10.1016/j.mimet.2004.04.002|Stöger (2004)]], \\  [[https://doi.org/10.1111/j.1365-2338.2005.00812.x|Moltmann (2005)]]                                                                                                                                     | [[https://doi.org/10.1094/PHYTO-98-3-0359|Turechek (2008)]], \\  [[https://doi.org/10.1111/j.1365-3059.2007.01813.x|Vandroemme (2008)]], \\  [[https://doi.org/10.17660/ActaHortic.2009.842.44|Cubero (2009)]]  | [[https://doi.org/10.1371/journal.pone.0147122|Wang (2016)]], [[https://doi.org/10.1111/ppa.12665|Gétaz (2017)]], \\  [[https://doi.org/10.1094/PDIS-10-19-2248-RE|Wang (2020)]], \\  [[https://doi.org/10.1111/jph.12900|Immanuel (2020)]]  |
@@ Line 141: / Line 141: @@
 Webber JB, Putnam M, Serdani M, Pscheidt JW, Wiman NG, Stockwell VO (2020). Characterization of isolates of //Xanthomonas arboricola// pv. //corylina//, the causal agent of bacterial blight, from Oregon hazelnut orchards. J. Plant Pathol. 102: 799-812. DOI: [[https://doi.org/10.1007/s42161-020-00505-6|10.1007/s42161-020-00505-6]]
+Webster J, Kehoe MA, Nogarotto E, Falconer L, Donovan NJ, Chapman TA (2022). Using genomics to design a pathovar-specific loop-mediated isothermal amplification (LAMP) assay, for the improved detection of //Xanthomonas citri// pv. //citri//. Microorganisms 10: 1153. DOI: [[https://doi.org/10.3390/microorganisms10061153|10.3390/microorganisms10061153]]
+Zhu Z, Li R, Zhang H, Wang J, Lu Y, Zhang D, Yang L (2022). PAM-free loop-mediated isothermal amplification coupled with CRISPR/Cas12a cleavage (Cas-PfLAMP) for rapid detection of rice pathogens. Biosens. Bioelectron. 204: 114076. DOI: [[https://doi.org/10.1016/j.bios.2022.114076|10.1016/j.bios.2022.114076]]
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