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--- bacteria:t3e:xopak [2020/06/10 12:40]
rkoebnik [References]
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-====== XopAK ======
-Author: Vittoria Catara\\
-Internal reviewer: Ralf Koebnik\\
-Expert reviewer: FIXME
-Class: XopAK\\
-Family: XopAK\\
-Prototype: XopAK (//Xanthomonas euvesicatoria// pv. //euvesicatoria// aka //Xanthomonas campestris// pv. //vescicatoria//; strain 85-10)\\
-RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/CAJ25517.1|CAJ25517.1]] (485 aa)\\
-D structure: Unknown
-===== Biological function =====
-=== How discovered? ===
-XopAK was discovered using a machine-learning approach (Teper //et al//., 2016).
-=== (Experimental) evidence for being a T3E ===
-XopAK, fused to the AvrBs2 reporter, was shown to translocate into plant cells in an //hrpF//-dependent manner (Teper //et al//., 2016).
-=== Regulation ===
-Unknown.
-=== Phenotypes ===
-Disease severity, ion leakage, chlorophyll content of pepper plants inoculated with a mutant strain obtained by insertion mutagenesis of //xopAK// and //in planta// bacterial growth were not affected as compared to plants inoculated with the parent strain //X. euvesicatoria// pv. //euvesicatoria// (//Xcv//) 85-10 (Teper //et al//., 2016).
-=== Localization ===
-Unknown.
-=== Enzymatic function ===
-XopAK has been predicted to be a deamidase (Teper //et al//., 2016).
-=== Interaction partners ===
-Unknown.
-===== Conservation =====
-=== In xanthomonads ===
-Yes (//e.g.//, //X. euvesicatoria//, //X. oryzae, X. citri, X. translucens// (Teper //et al//., 2016; Barak //et al//., 2016)).
-=== In other plant pathogens/symbionts ===
-Yes (//e.g.//, //Ralstonia solanacearum// (Teper //et al//., 2016), //Pseudomonas syringae// effector HopK1 (Li //et al//., 2014)).
-===== References =====
-Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016). Whole-genome sequences of //Xanthomonas euvesicatoria// strains clarify taxonomy and reveal a stepwise erosion of type 3 effectors. Front. Plant Sci. 7: 1805. DOI: [[https://doi.org/10.3389/fpls.2016.01805|10.3389/fpls.2016.01805]]
-Li G, Froehlich JE, Elowsky C, Msanne J, Ostosh AC, Zhang C, Awada T, Alfano JR (2014). Distinct Pseudomonas type-III effectors use a cleavable transit peptide to target chloroplasts. Plant J. 77: 310-321. DOI: [[https://doi.org/10.1111/tpj.12396|10.1111/tpj.12396]]
-Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel //Xanthomonas euvesicatoria// type III effector proteins by a machine‐learning approach. Mol. Plant Pathol. 17: 398-411. DOI: [[https://doi.org/10.1111/mpp.12288|10.1111/mpp.12288]]

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