Differences

This shows you the differences between two versions of the page.

--- bacteria:t3e:xopal2 [2020/07/09 13:17]
rkoebnik [References]
+++ — (current)
@@ Line 1: / Line 1: @@
-====== XopAL2 ======
-Author: [[https://www.researchgate.net/profile/Matthieu_Arlat|Matthieu Arlat]]\\
-Internal reviewer: FIXME \\
-Expert reviewer: FIXME
-Class: XopAL\\
-Family: XopAL2\\
-Prototype: XopAL2 (//Xanthomonas// campestris pv. //campestris// B100, gene //Xb100_0616//; Vorhölter //et al//., 2008)\\
-RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/CAP49952.1|CAP49952.1]] (293 aa)\\
-D structure: Unknown
-===== Biological function =====
-=== How discovered? ===
-Gene annotated in the genome of //Xanthomonas// campestris pv. //campestris// B100 (XccB100) (Vorhölter //et al//., 2008).
-=== (Experimental) evidence for being a T3E ===
-No experimental evidence. Identified in XccB100 genome and annotated as XopAL2, displays 29% identity and 43% similarity with XopAL1 at the aa level.
-=== Regulation ===
-Presence of a putative PIP box in the promoter region (M. Arlat, personnal communication).
-=== Phenotypes ===
-Unknown.
-=== Localization ===
-Unknown.
-=== Enzymatic function ===
-Unknown.
-=== Interaction partners ===
-Unknown.
-===== Conservation =====
-=== In xanthomonads ===
-Yes, //X. campestris// (Roux //et al//., 2015), //X. citri//
-=== In other plant pathogens/symbionts ===
-//Ralstonia solanacearum// (Rs_T3E_Hyp14; Peeters //et al//., 2013), //Erwinia amylovora// (Eop3; Nissinen //et al//., 2007, HopX1<sub>Ea</sub>; Bocsanczy //et al//., 2012), //Pseudomonas// spp.
-===== References =====
-Bocsanczy AM, Schneider DJ, DeClerck GA, Cartinhour S, Beer SV (2012). HopX1 in //Erwinia amylovora// functions as an avirulence protein in apple and is regulated by HrpL. J Bacteriol. 194: 553-560. DOI: [[https://doi.org/10.1128/JB.05065-11|10.1128/JB.05065-11]].
-Guy E, Genissel A, Hajri A, Chabannes M, David P, Carrere S, Lautier M, Roux B, Boureau T, Arlat M, Poussier S, Noël LD (2013). Natural genetic variation of //Xanthomonas campestris// pv. //campestris// pathogenicity on //Arabidopsis// revealed by association and reverse genetics. mBio 4: e00538-12. DOI: [[https://doi.org/10.1128/mBio.00538-12|10.1128/mBio.00538-12]]. Erratum in: MBio (2013) 4: e00978-13. FIXME Information needs to be added to the profile!
-Nissinen RM, Ytterberg AJ, Bogdanove AJ, Van Wijk KJ, Beer SV. (2007). Analyses of the secretomes of //Erwinia amylovora// and selected hrp mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels. Mol. Plant Pathol. 8: 55-67. DOI: [[https://doi.org/10.1111/j.1364-3703.2006.00370.x|10.1111/j.1364-3703.2006.00370.x]].
-Peeters N, Carrère S, Anisimova M, Plener L, Cazalé AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the type III effector gene set in the //Ralstonia solanacearum// species complex. BMC Genomics. 14: 859. DOI: [[https://doi.org/10.1186/1471-2164-14-859|10.1186/1471-2164-14-859]].
-Roux B, Bolot S, Guy E, Denancé N, Lautier M, Jardinaud MF, Fischer-Le Saux M, Portier P, Jacques MA, Gagnevin L, Pruvost O, Lauber E, Arlat M, Carrère S, Koebnik R, Noël LD (2015). Genomics and transcriptomics of //Xanthomonas campestris// species challenge the concept of core type III effectome. BMC Genomics. 16: 975. DOI: [[https://doi.org/10.1186/s12864-015-2190-0|10.1186/s12864-015-2190-0]].
-Vorhölter FJ, Schneiker S, Goesmann A, Krause L, Bekel T, Kaiser O, Linke B, Patschkowski T, Rückert C, Schmid J, Sidhu VK, Sieber V, Tauch A, Watt SA, Weisshaar B, Becker A, Niehaus K, Pühler A. (2008). The genome of //Xanthomonas campestris// pv. //campestris// B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. J Biotechnol. 134: 33-45. DOI: [[https://doi.org/10.1016/j.jbiotec.2007.12.013|https://doi.org/10.1016/j.jbiotec.2007.12.013]].

EuroXanth DokuWiki

User Tools

Site Tools

Differences

Page Tools