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bacteria:t3e:t3e [2022/07/25 10:58]
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-====== Type III effectors ====== 
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-[[http://www.biopred.net/xanthomonas/|Link to the original xanthomonas.org webpage]] 
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-[[:bacteria:t3e:effector_reviews|Review papers on type III effectors]] 
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-[[:bacteria:t3e:software|Software for type III effectors]] 
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-[[:bacteria:t3e:t3e_template|Empty template]] - [[:bacteria:t3e:xopau|Example 1: XopAU]] - [[:bacteria:t3e:xopb|Example 2: XopB]] 
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-^Class ^Family ^Synonyms ^Related proteins ^RefSeq ID ^Function / Features | 
-|AvrBs1 |[[:bacteria:t3e:avrbs1|AvrBs1]] |  |AvrA |[[https://www.ncbi.nlm.nih.gov/protein/NP_637464.1|NP_637464.1]] |  | 
-|AvrBs2 |[[:bacteria:t3e:avrbs2|AvrBs2]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/NP_635447.1|NP_635447.1]] \\  [[https://www.ncbi.nlm.nih.gov/protein/WP_011035310.1|WP_011035310.1]] |[[http://pfam.xfam.org/family/PF03009.17|Glycerophosphoryl diester phosphodiesterase family]] | 
-|AvrBs3 |[[:bacteria:t3e:avrbs3|AvrBs3]] |PthA, PthB, PthN, PthXo, AvrXa7, AvrXa27, TALE |  |[[https://www.ncbi.nlm.nih.gov/protein/P14727.2|P14727.2]] \\  [[https://www.ncbi.nlm.nih.gov/protein/WP_011052943.1|WP_011052943.1]] |[[http://pfam.xfam.org/family/PF03377.13|TAL effector repeat]]; Transcription activator in eukaryotic host cell; Nuclear localization | 
-|XopB |[[:bacteria:t3e:xopb|XopB]] |  |HopD1 (HopPtoD1, AvrPphD1) |[[https://www.ncbi.nlm.nih.gov/protein/WP_039417318.1|WP_039417318.1]] |  | 
-|XopC |[[:bacteria:t3e:xopc|XopC1]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/CAJ24112.1|CAJ24112.1]] \\  [[https://www.ncbi.nlm.nih.gov/protein/WP_046935566.1|WP_046935566.1]] |Phosphoribosyl transferase domain; [[http://pfam.xfam.org/family/PF13419.6|Haloacid dehalogenase-like hydrolase]] | 
-|XopC |[[:bacteria:t3e:xopc|XopC2]] |  |RSp1239 |[[https://www.ncbi.nlm.nih.gov/protein/WP_041183113.1|WP_041183113.1]] |  | 
-|XopD |[[:bacteria:t3e:xopd|XopD]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346109.1|WP_011346109.1]] \\  FIXME  |C48-family SUMO cysteine protease ([[http://pfam.xfam.org/family/PF02902.19|Ulp1 protease family]]); EAR motif; DNA binding; Nuclear localization | 
-|XopE |[[:bacteria:t3e:xope1|XopE1]] |AvrXacE1 |HopX (AvrPphE) |[[https://www.ncbi.nlm.nih.gov/protein/WP_011345998.1|WP_011345998.1]] |Putative transglutaminase | 
-|XopE |[[:bacteria:t3e:xope2|XopE2]] |AvrXacE3, AvrXccE1 |HopX (AvrPphE) |[[https://www.ncbi.nlm.nih.gov/protein/WP_011347479.1|WP_011347479.1]] |Putative transglutaminase | 
-|XopE |[[:bacteria:t3e:xope3|XopE3]] |AvrXacE2 |HopX (AvrPphE) |[[https://www.ncbi.nlm.nih.gov/protein/WP_011052114.1|WP_011052114.1]] |Putative transglutaminase | 
-|XopE |[[:bacteria:t3e:xope4|XopE4]] |  |Putative HopX (AvrPphE) |[[https://www.ncbi.nlm.nih.gov/protein/EFF46466.1|EFF46466.1]] |  | 
-|XopE |[[:bacteria:t3e:xope5|XopE5]] |  |Putative HopX (AvrPphE) |  |Putative transglutaminase | 
-|XopF |[[:bacteria:t3e:xopf|XopF1]] |Hpa4 |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346095.1|WP_011346095.1]] |  | 
-|XopF |[[:bacteria:t3e:xopf|XopF2]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_046934774.1|WP_046934774.1]] |  | 
-|XopF |[[:bacteria:t3e:xopf|XopF3]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/589298639|WP_AHK80891.1]] |  | 
-|XopG |[[:bacteria:t3e:xopg|XopG1]] |  |HopH (HopPtoH), HopAP |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346758.1|WP_011346758.1]] |[[http://pfam.xfam.org/family/PF14891.6|Peptidase_M91 superfamily]]; HEXXH motif, typical of zinc metallopeptidases | 
-|XopG |[[:bacteria:t3e:xopg|XopG2]] |  |HopH (HopPtoH), HopAP |  |  | 
-|XopG |[[:bacteria:t3e:xopg|XopG3]] |  |HopH (HopPtoH), HopAP |  |  | 
-|XopH |[[:bacteria:t3e:xoph|XopH1]] |AvrBs1.1 |HopAO1 (HopPtoD2) |[[https://www.ncbi.nlm.nih.gov/protein/WP_074038421.1|WP_074038421.1]] |[[http://pfam.xfam.org/family/PF14566.6|Protein tyrosine phosphatase-like phytase]] | 
-|XopH |[[:bacteria:t3e:xoph|XopH2]] |AvrBs1.1 |HopAO1 (HopPtoD2) |  |  | 
-|XopI |[[:bacteria:t3e:xopi|XopI1]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346406.1|WP_011346406.1]] |[[http://pfam.xfam.org/family/PF00646.33|F-box domain]] | 
-|XopI |[[:bacteria:t3e:xopi|XopI2]] |  |  |  |  | 
-|XopJ |[[:bacteria:t3e:xopj1|XopJ1]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011347382.1|WP_011347382.1]] |[[http://pfam.xfam.org/family/PF03421.16|Ser/Thr acetyltransferase]] | 
-|XopJ |[[:bacteria:t3e:xopj2|XopJ2]] |AvrBsT |HopZ2 |[[https://www.ncbi.nlm.nih.gov/protein/WP_074052319.1|WP_074052319.1]] |[[http://pfam.xfam.org/family/PF03421.16|Ser/Thr acetyltransferase]] | 
-|XopJ |[[:bacteria:t3e:xopj3|XopJ3]] |AvrRxv |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346137.1|WP_011346137.1]] |[[http://pfam.xfam.org/family/PF03421.16|Ser/Thr acetyltransferase]] | 
-|XopJ |[[:bacteria:t3e:xopj4|XopJ4]] |AvrXv4 |PopP1 |[[https://www.ncbi.nlm.nih.gov/protein/WP_008572727.1|WP_008572727.1]] |[[http://pfam.xfam.org/family/PF03421.16|Ser/Thr acetyltransferase]] | 
-|XopJ |[[:bacteria:t3e:xopj5|XopJ5]] |AvrXccB |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_075287867.1|WP_075287867.1]] |[[http://pfam.xfam.org/family/PF03421.16|Ser/Thr acetyltransferase]] | 
-|XopJ |[[:bacteria:t3e:xopj6|XopJ6]] FIXME  |  |  |  |  | 
-|XopK |[[:bacteria:t3e:xopk|XopK]] |  |  |  [[https://www.ncbi.nlm.nih.gov/protein/WP_027703763.1|WP_027703763.1]]  |  | 
-|XopL |[[:bacteria:t3e:xopl|XopL]] |  |  |  [[https://www.ncbi.nlm.nih.gov/protein/WP_011039250.1|WP_011039250.1]]  |LRR protein | 
-|XopM |[[:bacteria:t3e:xopm|XopM]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346113.1|WP_011346113.1]] |  | 
-|XopN |[[:bacteria:t3e:xopn|XopN]] |  |HopAU1 |[[https://www.ncbi.nlm.nih.gov/protein/WP_011348010.1|WP_011348010.1]] |ARM/HEAT repeat | 
-|XopO |[[:bacteria:t3e:xopo|XopO]] |  |HopK1 (HopPtoK, HolPtoAB) N-terminal domain, AvrRps4 |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346566.1|WP_011346566.1]] |  | 
-|XopP |[[:bacteria:t3e:xopp|XopP]] |  |Hlk |[[https://www.ncbi.nlm.nih.gov/protein/WP_104613784.1|WP_104613784.1]] |  | 
-|XopQ |[[:bacteria:t3e:xopq|XopQ]] |  |HopQ1 (HolPtoQ), RipB |[[https://www.ncbi.nlm.nih.gov/protein/WP_011349176.1|WP_011349176.1]] |[[http://pfam.xfam.org/family/PF01156.19|Inosine-uridine preferring nucleoside hydrolase]] | 
-|XopR |[[:bacteria:t3e:xopr|XopR]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011260681.1|WP_011260681.1]] |  | 
-|XopS |[[:bacteria:t3e:xops|XopS]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_039418869.1|WP_039418869.1]] |  | 
-|XopT |[[:bacteria:t3e:xopt|XopT]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_075242412.1|WP_075242412.1]] |  | 
-|XopU |[[:bacteria:t3e:xopu|XopU]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_042465048.1|WP_042465048.1]] |  | 
-|XopV |[[:bacteria:t3e:xopv|XopV]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011409498.1|WP_011409498.1]] |  | 
-|XopW |[[:bacteria:t3e:xopw|XopW]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_012443642.1|WP_012443642.1]] |  | 
-|XopX |[[:bacteria:t3e:xopx|XopX]] |  |HopAE1 (HolPsyAE) |[[https://www.ncbi.nlm.nih.gov/protein/WP_029818523.1|WP_029818523.1]] |  | 
-|XopY |[[:bacteria:t3e:xopy|XopY]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_113013931.1|WP_113013931.1]] |  | 
-|XopZ |[[:bacteria:t3e:xopz|XopZ1]] |  |HopAS1 |  |  | 
-|XopZ |[[:bacteria:t3e:xopz|XopZ2]] |  |  |  |  | 
-|XopAA |[[:bacteria:t3e:xopaa|XopAA]] FIXME  |Ecf |HopAE1 (HolPsyAE) |[[https://www.ncbi.nlm.nih.gov/protein/WP_041855088.1|WP_041855088.1]] |Early chlorosis factor; Proteasome/cyclosome repeat | 
-|XopAB |[[:bacteria:t3e:xopab|XopAB]] FIXME  |  |weakly related to XopN |[[https://www.ncbi.nlm.nih.gov/protein/WP_080496267.1|WP_080496267.1]] |  | 
-|XopAC |[[:bacteria:t3e:xopac|XopAC]] |AvrAC |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011269629.1|WP_011269629.1]] |LRR; [[http://pfam.xfam.org/family/PF02661.18|Fic/DOC family]]; Vascular hypersensitivity in //Arabidopsis// landrace Col-0  | 
-|XopAD |[[:bacteria:t3e:xopad|XopAD]] |  |RSc3401 |[[https://www.ncbi.nlm.nih.gov/protein/WP_129593164.1|WP_129593164.1]] |SKWP repeat protein | 
-|XopAE |[[:bacteria:t3e:xopae|XopAE]] |HpaF/HpaG |PopC |[[https://www.ncbi.nlm.nih.gov/protein/WP_011257061.1|WP_011257061.1]] |[[http://pfam.xfam.org/family/PF13855.6|LRR]] protein | 
-|XopAF |[[:bacteria:t3e:xopaf|XopAF1]] |AvrXv3 |HopAF1 (HopPtoJ) |[[https://www.ncbi.nlm.nih.gov/protein/WP_008577605.1|WP_008577605.1]] |  | 
-|XopAF |[[:bacteria:t3e:xopaf|XopAF2]] |AvrXv3 |HopAF1 (HopPtoJ) |  |  | 
-|XopAG |[[:bacteria:t3e:xopag|XopAG]] |AvrGf1 |HopG1 (HopPtoG), HolPtoW |[[https://www.ncbi.nlm.nih.gov/protein/WP_080633702.1|WP_080633702.1]] |  | 
-|XopAH |[[:bacteria:t3e:xopah|XopAH]] |AvrXccC |AvrB/AvrC (AvrPphC) |[[https://www.ncbi.nlm.nih.gov/protein/WP_050912223.1|WP_050912223.1]] |[[http://pfam.xfam.org/family/PF05394.11|AvrB/AvrC-family avirulence protein]] | 
-|XopAI |[[:bacteria:t3e:xopai|XopAI]] FIXME  |  |HopO1 (HopPtoO, HopPtoS), HopAI1 (HolPtoAI) |[[https://www.ncbi.nlm.nih.gov/protein/WP_011052119.1|WP_011052119.1]] |Putative <sup>[[http://pfam.xfam.org/family/PF01129.18|NAD(P)+]]</sup>  [[http://pfam.xfam.org/family/PF01129.18|-protein-arginine ADP-ribosyltransferase]] | 
-|XopAJ |[[:bacteria:t3e:xopaj|XopAJ]] |AvrRxo1 |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_014504815.1|WP_014504815.1]] \\  FIXME  |  | 
-|XopAK |[[:bacteria:t3e:xopak|XopAK]] |  |HopK1 (HopPtoK, HolPtoAB) C-terminal domain |[[https://www.ncbi.nlm.nih.gov/protein/WP_033837133.1|WP_033837133.1]] |  | 
-|XopAL |[[:bacteria:t3e:xopal1|XopAL1]] |  |Eop3 |[[https://www.ncbi.nlm.nih.gov/protein/WP_011036441.1|WP_011036441.1]] |  | 
-|XopAL |[[:bacteria:t3e:xopal2|XopAL2]] |  |Eop3 |  |  | 
-|XopAM |[[:bacteria:t3e:xopam|XopAM]] FIXME  |  |HopR1 |[[https://www.ncbi.nlm.nih.gov/protein/WP_011036289.1|WP_011036289.1]] |  | 
-|XopAN |[[:bacteria:t3e:xopan|XopAN]] FIXME  |  |  |  |  | 
-|XopAO |[[:bacteria:t3e:xopao|XopAO]] FIXME  |  |AvrRpm1 |[[https://www.ncbi.nlm.nih.gov/protein/EGD20072.1|EGD20072.1]] |  | 
-|XopAP |[[:bacteria:t3e:xopap|XopAP]] |  |RipAL |[[https://www.ncbi.nlm.nih.gov/protein/WP_039417385.1|WP_039417385.1]] |[[http://pfam.xfam.org/family/PF01764.25|Class-3 lipase]] | 
-|XopAQ |[[:bacteria:t3e:xopaq|XopAQ]] |  |Rip6/Rip11 |[[https://www.ncbi.nlm.nih.gov/protein/WP_006450400.1|WP_006450400.1]] |  | 
-|XopAR |[[:bacteria:t3e:xopar|XopAR]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_005994454.1|WP_005994454.1]] |  | 
-|XopAS |[[:bacteria:t3e:xopas|XopAS]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_081376520.1|WP_081376520.1]] |  | 
-|XopAT |[[:bacteria:t3e:xopat|XopAT]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/AEL06363.1|AEL06363.1]] |  | 
-|XopAU |[[:bacteria:t3e:xopau|XopAU]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_041855031.1|WP_041855031.1]] |Serine/threonine kinase; [[http://pfam.xfam.org/family/PF00069.25|Protein kinase domain]] | 
-|XopAV |[[:bacteria:t3e:xopav|XopAV]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_065628638.1|WP_065628638.1]] |  | 
-|XopAW |[[:bacteria:t3e:xopaw|XopAW]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011348129.1|WP_011348129.1]] |Calcium-binding protein; [[http://pfam.xfam.org/family/PF13499.6|EF-hand domain pair]] | 
-|XopAX |[[:bacteria:t3e:xopax|XopAX]] |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011345694.1|WP_011345694.1]] |  | 
-|XopAY |[[:bacteria:t3e:xopay|XopAY]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_015462941.1|WP_015462941.1]] |  | 
-|XopAZ |[[:bacteria:t3e:xopaz|XopAZ]] FIXME  |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011050866.1|WP_011050866.1]] |SlpA superfamily; [[http://pfam.xfam.org/family/PF00254.28|FKBP-type peptidyl-prolyl cis-trans isomerase]] | 
-|XopBA |XopBA |  |  |  |  | 
-|XopA |XopA |Hpa1/HpaG |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346111.1|WP_011346111.1]] |Harpin, maybe not a T3E | 
-|HpaA |HpaA |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011346100.1|WP_011346100.1]] |Type III secretion control protein, maybe not a T3E | 
-|HrpW |HrpW |  |PopW |[[https://www.ncbi.nlm.nih.gov/protein/WP_005926112.1|WP_005926112.1]] |[[http://pfam.xfam.org/family/PF03211.13|Pectate lyase]], maybe not a T3E | 
-|AvrXccA |AvrXccA1 |AvrXca |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011039290.1|WP_011039290.1]] |Unknown, maybe not a T3E | 
-|AvrXccA |AvrXccA2 |  |  |[[https://www.ncbi.nlm.nih.gov/protein/WP_011037538.1|WP_011037538.1]] |Unknown, maybe not a T3E | 
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bacteria/t3e/t3e.1658739482.txt.gz ยท Last modified: 2022/07/25 10:58 by rkoebnik

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