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- | ====== Tools for molecular typing of regulated Xanthomonas ====== | ||
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- | This data is based on the review by [[https:// | ||
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- | ^ Pathogen | ||
- | |**A1 list** ||||| | ||
- | |//X//. //citri// pv. aurantifolii | ||
- | |//X//. //citri// pv. citri |[[https:// | ||
- | |//X//. // | ||
- | |//X//. //oryzae// pv. oryzae | ||
- | |//X//. //oryzae// pv. oryzicola | ||
- | |**A2 list** ||||| | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
- | |//X//. // | ||
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- | < | ||
- | ===== References ===== | ||
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- | Boudon S, Manceau C, Nottéghem JL (2005). Structure and origin of // | ||
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- | Bragard C, Singer E, Alizadeh A, Vauterin L, Maraite H, Swings J (1997). // | ||
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- | Bui Thi Ngoc L, Vernière C, Jouen E, Ah-You N, Lefeuvre P, Chiroleu F, Gagnevin L, Pruvost O. (2010). Amplified fragment length polymorphism and multilocus sequence analysis-based genotypic relatedness among pathogenic variants of // | ||
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- | Bui Thi Ngoc L, Verniere C, Vital K, Guerin F, Gagnevin L, Brisse S, Ah-You N, Pruvost O (2009). Development of 14 minisatellite markers for the citrus canker bacterium, // | ||
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- | Cesbron S, Pothier J, Gironde S, Jacques MA, Manceau C (2014). Development of multilocus variable-number tandem repeat analysis (MLVA) for // | ||
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- | Curland RD, Gao L, Bull CT, Vinatzer BA, Dill-Macky R, Van Eck L, Ishimaru CA (2018). Genetic diversity and virulence of wheat and barley strains of // | ||
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- | Curland RD, Gao L, Hirsch CD, Ishimaru CA (2020). Localized genetic and phenotypic diversity of // | ||
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- | Dhakal U, Dobhal S, Alvarez AM, Arif M (2019). Phylogenetic analyses of xanthomonads causing bacterial leaf spot of tomato and pepper: // | ||
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- | Donahoo RS, Jones JB, Lacy GH, Stromberg VK, Norman DJ (2013). Genetic analyses of // | ||
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- | Escalon A, Javegny S, Vernière C, Noël LD, Vital K, Poussier S, Hajri A, Boureau T, Pruvost O, Arlat M, Gagnevin L (2013). Variations in type III effector repertoires, | ||
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- | Essakhi S, Cesbron S, Fischer-Le Saux M, Bonneau S, Jacques MA, Manceau C (2015). Phylogenetic and variable-number tandem-repeat analyses identify nonpathogenic // | ||
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- | Gent DH, Al-Saadi A, Gabriel DW, Louws FJ, Ishimaru CA, Schwartz HF (2005). Pathogenic and genetic relatedness among // | ||
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- | Gent DH, Schwartz HF, Ishimaru CA, Louws FJ, Cramer RA, Lawrence CB (2004). Polyphasic characterization of // | ||
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- | George ML, Bustamam M, Cruz WT, Leach JE, Nelson RJ (1997). Movement of // | ||
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- | Gétaz M, Krijger M, Rezzonico F, Smits THM, van der Wolf JM, Pothier JF (2018). Genome-based population structure analysis of the strawberry plant pathogen // | ||
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- | Hajri A, Brin C, Zhao S, David P, Feng JX, Koebnik R, Szurek B, Verdier V, Boureau T, Poussier S (2012). Multilocus sequence analysis and type III effector repertoire mining provide new insights into the evolutionary history and virulence of // | ||
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- | Hajri A, Meyer D, Delort F, Guillaumès J, Brin C, Manceau C (2010). Identification of a genetic lineage within // | ||
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- | Hamza AA, Robène-Soustrade I, Jouen E, Gagnevin L, Lefeuvre P, Chiroleu F, Pruvost O (2010). Genetic and pathological diversity among // | ||
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- | Hamza AA, Robene-Soustrade I, Jouen E, Lefeuvre P, Chiroleu F, Fisher-Le Saux M, Gagnevin L, Pruvost O (2012). MultiLocus Sequence Analysis- and Amplified Fragment Length Polymorphism-based characterization of xanthomonads associated with bacterial spot of tomato and pepper and their relatedness to // | ||
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- | Humeau L, Roumagnac P, Picard Y, Robène-Soustrade I, Chiroleu F, Gagnevin L, Pruvost O (2006). Quantitative and molecular epidemiology of bacterial blight of onion in seed production fields. Phytopathology 96: 1345-1354. DOI: [[https:// | ||
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- | Jeong K, Muñoz-Bodnar A, Arias Rojas N, Poulin L, Rodriguez-R LM, Gagnevin L, Vernière C, Pruvost O, Koebnik R (2019). CRISPR elements provide a new framework for the genealogy of the citrus canker pathogen // | ||
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- | Khojasteh M, Taghavi SM, Khodaygan P, Hamzehzarghani H, Chen G, Bragard C, Koebnik R, Osdaghi E (2019). Molecular typing reveals high genetic diversity of // | ||
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- | Khoodoo MHR, Jaufeerally-Fakim Y (2004). RAPD-PCR fingerprinting and Southern analysis of // | ||
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- | Leduc A, Traoré YN, Boyer K, Magne M, Grygiel P, Juhasz CC, Boyer C, Guerin F, Wonni I, Ouedraogo L, Vernière C, Ravigné V, Pruvost O (2015). Bridgehead invasion of a monomorphic plant pathogenic bacterium: // | ||
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- | Loreti S, Gallelli A, Belisario A, Wajnberg E, Corazza L (2001). Investigation of genomic variability of // | ||
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- | Mhedbi-Hajri N, Hajri A, Boureau T, Darrasse A, Durand K, Brin C, Fischer-Le Saux M, Manceau C, Poussier S, Pruvost O, Lemaire C, Jacques MA (2013). Evolutionary history of the plant pathogenic bacterium // | ||
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- | Mkandawire AB, Mabagala RB, Guzmán P, Gepts P, Gilbertson RL (2004). Genetic diversity and pathogenic variation of common blight bacteria (// | ||
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- | Picard Y, Roumagnac P, Legrand D, Humeau L, Robène-Soustrade I, Chiroleu F, Gagnevin L, Pruvost O (2008). Polyphasic characterization of// Xanthomonas axonopodis// | ||
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- | Pooler MR, Ritchie DF, Hartung JS (1996). Genetic relationships among strains of // | ||
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- | Poulin L, Grygiel P, Magne M, Gagnevin L, Rodriguez-R LM, Forero Serna N, Zhao S, El Rafii M, Dao S, Tekete C, Wonni I, Koita O, Pruvost O, Verdier V, Vernière C, Koebnik R (2015). New multilocus variable-number tandem-repeat analysis tool for surveillance and local epidemiology of bacterial leaf blight and bacterial leaf streak of rice caused by // | ||
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- | Pruvost O, Boyer K, Ravigné V, Richard D, Vernière C (2019). Deciphering how plant pathogenic bacteria disperse and meet: Molecular epidemiology of // | ||
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- | Pruvost O, Magne M, Boyer K, Leduc A, Tourterel C, Drevet C, Ravigné V, Gagnevin L, Guérin F, Chiroleu F, Koebnik R, Verdier V, Vernière C (2014). A MLVA genotyping scheme for global surveillance of the citrus pathogen // | ||
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- | Pruvost O, Richard D, Boyer K, Javegny S, Boyer C, Chiroleu F, Grygiel P, Parvedy E, Robène I, Maillot-Lebon V, Hamza A, Lobin KK, Naiken M, Vernière C (2021). Diversity and geographical structure of // | ||
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- | Rademaker JL, Norman DJ, Forster RL, Louws FJ, Schultz MH, de Bruijn FJ (2006). Classification and identification of // | ||
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- | Roberts PD, Hodge NC, Bouzar H, Jones JB, Stall RE, Berger RD, Chase AR (1998). Relatedness of strains of // | ||
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- | Rockey W, Potnis N, Timilsina S, Hong JC, Vallad GE, Jones JB, Norman DJ (2015). Multilocus sequence analysis reveals genetic diversity in xanthomonads associated with poinsettia production. Plant Dis. 99: 874-882. DOI: [[https:// | ||
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- | Sakthivel K, Kumar A, Gautam RK, Manigundan K, Laha GS, Velazhahan R, Singh R, Yadav IS (2021). Intra-regional diversity of rice bacterial blight pathogen, // | ||
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- | Scortichini M, Marchesi U, Di Prospero P (2001). Genetic diversity of // | ||
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- | Vancheva T, Bogatzevska N, Moncheva P, Mitrev S, Vernière C, Koebnik R (2021). Molecular epidemiology of // | ||
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- | Wonni I, Cottyn B, Detemmerman L, Dao S, Ouedraogo L, Sarra S, Tekete C, Poussier S, Corral R, Triplett L, Koita O, Koebnik R, Leach J, Szurek B, Maes M, Verdier V (2014). Analysis of // | ||
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- | Zhao S, Poulin L, Rodriguez-R LM, Serna NF, Liu SY, Wonni I, Szurek B, Verdier V, Leach JE, He YQ, Feng JX, Koebnik R (2012). Development of a variable number of tandem repeats typing scheme for the bacterial rice pathogen // | ||
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- | ===== Further reading ===== | ||
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- | Catara V, Cubero J, Pothier JF, Bosis E, Bragard C, Đermić E, Holeva MC, Jacques MA, Petter F, Pruvost O, Robène I, Studholme DJ, Tavares F, Vicente JG, Koebnik R, Costa J (2021). Trends in molecular diagnosis and diversity studies for phytosanitary regulated // | ||
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