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Molecular Diagnosis and Diversity for Regulated Xanthomonas
Bacterial virulence factors
This DokuWiki is based upon work from COST Action CA16107 EuroXanth, supported by COST (European Cooperation in Science and Technology)
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Link to the original Xanthomonas //Resource @ xanthomonas.org
Review papers on type III effectors
Software for type III effectors
Empty template - Example 1: XopAU - Example 2: XopB
| Class | Family | Synonyms | Related proteins | RefSeq ID | Function / Features |
|---|---|---|---|---|---|
| AvrBs1 | AvrBs1 | AvrA | NP_637464.1 | ||
| AvrBs2 | AvrBs2 | NP_635447.1 WP_011035310.1 | Glycerophosphoryl diester phosphodiesterase family | ||
| AvrBs3 | AvrBs3 | PthA, PthB, PthN, PthXo, AvrXa7, AvrXa27, TALE | P14727.2 WP_011052943.1 | TAL effector repeat; Transcription activator in eukaryotic host cell; Nuclear localization | |
| XopB | XopB | HopD1 (HopPtoD1, AvrPphD1) | WP_039417318.1 | ||
| XopC | XopC1 | CAJ24112.1 WP_046935566.1 | Phosphoribosyl transferase domain; Haloacid dehalogenase-like hydrolase | ||
| XopC | XopC2 | RSp1239 | WP_041183113.1 | ||
| XopD | XopD | WP_011346109.1  | C48-family SUMO cysteine protease (Ulp1 protease family); EAR motif; DNA binding; Nuclear localization | ||
| XopE | XopE1 | AvrXacE1 | HopX (AvrPphE) | WP_011345998.1 | Putative transglutaminase |
| XopE | XopE2 | AvrXacE3, AvrXccE1 | HopX (AvrPphE) | WP_011347479.1 | Putative transglutaminase |
| XopE | XopE3 | AvrXacE2 | HopX (AvrPphE) | WP_011052114.1 | Putative transglutaminase |
| XopE | XopE4 | Putative HopX (AvrPphE) | EFF46466.1 | ||
| XopE | XopE5 | Putative HopX (AvrPphE) | Putative transglutaminase | ||
| XopF | XopF1 | Hpa4 | WP_011346095.1 | ||
| XopF | XopF2 | WP_046934774.1 | |||
| XopF | XopF3 | WP_AHK80891.1 | |||
| XopG | XopG1 | HopH (HopPtoH), HopAP | WP_011346758.1 | Peptidase_M91 superfamily; HEXXH motif, typical of zinc metallopeptidases | |
| XopG | XopG2 | HopH (HopPtoH), HopAP | |||
| XopG | XopG3 | HopH (HopPtoH), HopAP | |||
| XopH | XopH1 | AvrBs1.1 | HopAO1 (HopPtoD2) | WP_074038421.1 | Protein tyrosine phosphatase-like phytase |
| XopH | XopH2 | AvrBs1.1 | HopAO1 (HopPtoD2) | ||
| XopI | XopI1 | WP_011346406.1 | F-box domain | ||
| XopI | XopI2 | ||||
| XopJ | XopJ1 | WP_011347382.1 | Ser/Thr acetyltransferase | ||
| XopJ | XopJ2 | AvrBsT | HopZ2 | WP_074052319.1 | Ser/Thr acetyltransferase |
| XopJ | XopJ3 | AvrRxv | WP_011346137.1 | Ser/Thr acetyltransferase | |
| XopJ | XopJ4 | AvrXv4 | PopP1 | WP_008572727.1 | Ser/Thr acetyltransferase |
| XopJ | XopJ5 | AvrXccB | WP_075287867.1 | Ser/Thr acetyltransferase | |
| XopJ | XopJ6 | ||||
| XopK | XopK | WP_027703763.1 | |||
| XopL | XopL | WP_011039250.1 | LRR protein | ||
| XopM | XopM | WP_011346113.1 | |||
| XopN | XopN | HopAU1 | WP_011348010.1 | ARM/HEAT repeat | |
| XopO | XopO | HopK1 (HopPtoK, HolPtoAB) N-terminal domain, AvrRps4 | WP_011346566.1 | ||
| XopP | XopP | Hlk | WP_104613784.1 | ||
| XopQ | XopQ | HopQ1 (HolPtoQ), RipB | WP_011349176.1 | Inosine-uridine preferring nucleoside hydrolase | |
| XopR | XopR | WP_011260681.1 | |||
| XopS | XopS | WP_039418869.1 | |||
| XopT | XopT | WP_075242412.1 | |||
| XopU | XopU | WP_042465048.1 | |||
| XopV | XopV | WP_011409498.1 | |||
| XopW | XopW | WP_012443642.1 | |||
| XopX | XopX | HopAE1 (HolPsyAE) | WP_029818523.1 | ||
| XopY | XopY | WP_113013931.1 | |||
| XopZ | XopZ1 | HopAS1 | |||
| XopZ | XopZ2 | ||||
| XopAA | XopAA | Ecf | HopAE1 (HolPsyAE) | WP_041855088.1 | Early chlorosis factor; Proteasome/cyclosome repeat |
| XopAB | XopAB | weakly related to XopN | WP_080496267.1 | ||
| XopAC | XopAC | AvrAC | WP_011269629.1 | LRR; Fic/DOC family; Vascular hypersensitivity in Arabidopsis landrace Col-0 | |
| XopAD | XopAD | RSc3401 | WP_129593164.1 | SKWP repeat protein | |
| XopAE | XopAE | HpaF/HpaG | PopC | WP_011257061.1 | LRR protein |
| XopAF | XopAF1 | AvrXv3 | HopAF1 (HopPtoJ) | WP_008577605.1 | |
| XopAF | XopAF2 | AvrXv3 | HopAF1 (HopPtoJ) | ||
| XopAG | XopAG | AvrGf1 | HopG1 (HopPtoG), HolPtoW | WP_080633702.1 | |
| XopAH | XopAH | AvrXccC | AvrB/AvrC (AvrPphC) | WP_050912223.1 | AvrB/AvrC-family avirulence protein |
| XopAI | XopAI | HopO1 (HopPtoO, HopPtoS), HopAI1 (HolPtoAI) | WP_011052119.1 | Putative NAD(P)+ -protein-arginine ADP-ribosyltransferase | |
| XopAJ | XopAJ | AvrRxo1 | WP_014504815.1 | ||
| XopAK | XopAK | HopK1 (HopPtoK, HolPtoAB) C-terminal domain | WP_033837133.1 | ||
| XopAL | XopAL1 | Eop3 | WP_011036441.1 | ||
| XopAL | XopAL2 | Eop3 | |||
| XopAM | XopAM | HopR1 | WP_011036289.1 | ||
| XopAN | XopAN | ||||
| XopAO | XopAO | AvrRpm1 | EGD20072.1 | ||
| XopAP | XopAP | RipAL | WP_039417385.1 | Class-3 lipase | |
| XopAQ | XopAQ | Rip6/Rip11 | WP_006450400.1 | ||
| XopAR | XopAR | WP_005994454.1 | |||
| XopAS | XopAS | WP_081376520.1 | |||
| XopAT | XopAT | AEL06363.1 | |||
| XopAU | XopAU | WP_041855031.1 | Serine/threonine kinase; Protein kinase domain | ||
| XopAV | XopAV | WP_065628638.1 | |||
| XopAW | XopAW | WP_011348129.1 | Calcium-binding protein; EF-hand domain pair | ||
| XopAX | XopAX | WP_011345694.1 | |||
| XopAY | XopAY | WP_015462941.1 | |||
| XopAZ | XopAZ | WP_011050866.1 | SlpA superfamily; FKBP-type peptidyl-prolyl cis-trans isomerase | ||
| XopBA | XopBA | ||||
| XopA | XopA | Hpa1/HpaG | WP_011346111.1 | Harpin, maybe not a T3E | |
| HpaA | HpaA | WP_011346100.1 | Type III secretion control protein, maybe not a T3E | ||
| HrpW | HrpW | PopW | WP_005926112.1 | Pectate lyase, maybe not a T3E | |
| AvrXccA | AvrXccA1 | AvrXca | WP_011039290.1 | Unknown, maybe not a T3E | |
| AvrXccA | AvrXccA2 | WP_011037538.1 | Unknown, maybe not a T3E |
