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--- plant:ryegrass [2020/07/01 15:20]
rkoebnik [Candidate gene: ve_007b_e10]
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-====== Italian ryegrass (//Lolium multiflorum// L.) ======
-Author: Florian Goettelmann\\
-Internal reviewer: Jaroslav Michalko\\
-Expert reviewer: FIXME
-===== Pathogen: //Xanthomonas transluscens// pv. //graminis// (//Xtg//) =====
-==== Resistance gene: major LG4 QTL ====
-=== Synonyms ===
-//NA//.
-=== Source ===
-M2289.
-=== Status (identified, mapped, cloned, sequenced) ===
-Mapped on LG4.
-=== Molecular markers ===
-LpSSRK05A11 (SSR), P38M50_252 (AFLP).
-=== Brief description ===
-Explained 66.8% of resistance in one greenhouse experiment and <del>13.3</del> 43.3% — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 13:57//— and 83.8% of resistance in two field experiments (Studer //et al.//, 2006).
-----
-==== Resistance gene: major LG4 QTL ====
-=== Synonyms ===
-//NA//
-=== Source ===
-M2289.
-=== Status (identified, mapped, cloned, sequenced) ===
-Mapped on LG4.
-=== Molecular markers ===
-<del>P38M50_410 (AFLP)</del>. P32M50_410 (AFLP) — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 14:01//—
-=== Brief description ===
-Explained 10.8% of resistance in one field experiment (Studer //et al.//, 2006).
-----
-==== Resistance gene: minor LG1 QTL ====
-=== Synonyms ===
-//NA//
-=== Source ===
-M2289.
-=== Status (identified, mapped, cloned, sequenced) ===
-Mapped on LG1.
-=== Molecular markers ===
-<del>P38M50_410 (AFLP). </del>LMgSSR04-06F (SSR) — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 14:11//—
-=== Brief description ===
-Explained <del>10.8</del> 2.9% — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 14:15//— of resistance in one field experiment<sup><font 11.0pt/inherit;;#333333;;inherit></font></sup>  (Studer //et al.//, 2006).
-----
-==== Resistance gene: minor LG5 QTL ====
-=== Synonyms ===
-//NA//
-=== Source ===
-M2289.
-=== Status (identified, mapped, cloned, sequenced) ===
-Mapped on LG5.
-=== Molecular markers ===
-E41M47_133 (AFLP).
-=== Brief description ===
-Explained 7.4% of resistance in one glasshouse experiment (Studer //et al.//, 2006).
-----
-==== Resistance gene: minor LG6 QTL ====
-=== Synonyms ===
-//NA//
-=== Source ===
-M2289.
-=== Status (identified, mapped, cloned, sequenced) ===
-Mapped on LG6.
-=== Molecular markers ===
-E39M50_196 (AFLP).
-=== Brief description ===
-Explained 7.3% of resistance in one field experiment (Studer //et al.//, 2006).
-----
-==== Candidate genes ====
-==== Candidate gene: F-BstCA-MseCG-188 F-BstCT-MseCA-188 — Jaroslav Michalko 2020/06/18 15:08 — ====
-=== Synonyms ===
-CX066043.
-=== Source ===
-« genotype A » (advanced breeding germplasm, Agroscope FAL Reckenholz, Switzerland).
-=== Status (identified, mapped, cloned, sequenced) ===
-Identified.
-=== Molecular markers ===
-//NA//
-=== Brief description ===
-Showed homology to an ERBP transcription factor in //Oryza sativa// (Rechsteiner //et al.//, 2006).
-----
-==== Candidate gene: F-BstTT-MseGG-159 ====
-=== Synonyms ===
-CX066053.
-=== Source ===
-« genotype A » (advanced breeding germplasm, Agroscope FAL Reckenholz, Switzerland).
-=== Status (identified, mapped, cloned, sequenced) ===
-Identified.
-=== Molecular markers ===
-//NA//
-=== Brief description ===
-Showed homology to <del>an EST sequence derived from //Vitis vinifera// infected with //Xylella fastidiosa// </del> a transforming growth factor TGF-β receptor-interacting protein from //O. sativa// (Rechsteiner //et al.//, 2006)<sup> </sup>  — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 15:12//—
-----
-==== Candidate gene: F-BstCG-MseGT-220 ====
-=== Synonyms ===
-CX066037.
-=== Source ===
-« genotype A » (advanced breeding germplasm, Agroscope FAL Reckenholz, Switzerland).
-=== Status (identified, mapped, cloned, sequenced) ===
-Identified.
-=== Molecular markers ===
-//NA//
-=== Brief description ===
-Showed homology to <del>transforming growth factor TGF-β receptor-interacting protein</del> an EST sequence derived from //Vitis vinifera// infected with //Xylella fastidiosa// (Rechsteiner //et al.//, 2006)<sup> </sup>  — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 15:16//—.
-----
-==== Candidate gene: F-BstCA-MseTG-50 ====
-=== Synonyms ===
-CX066030.
-=== Source ===
-« genotype A » (advanced breeding germplasm, Agroscope FAL Reckenholz, Switzerland).
-=== Status (identified, mapped, cloned, sequenced) ===
-Identified.
-=== Molecular markers ===
-//NA//
-=== Brief description ===
-Showed homology to guanine nucleotide-binding protein beta (GB1) in //Oryza sativa// (Rechsteiner //et al.//, 2006).
-----
-==== Candidate gene: //r_010d_c04// ====
-=== Synonyms ===
-Lsi1.
-=== Source ===
-LmB-01 (Syn1 progeny).
-=== Status (identified, mapped, cloned, sequenced) ===
-Identified.
-=== Molecular markers ===
-//NA//
-=== Brief description ===
-Belongs to the nodulin26-like intrinsic protein family of aquaporins (Wichmann //et al.//, 2011) .
-----
-==== Candidate gene: r_010d_c02 ====
-=== Synonyms ===
-//NA//.
-=== Source ===
-LmB-01 (Syn1 progeny).
-=== Status (identified, mapped, cloned, sequenced) ===
-Identified.
-=== Molecular markers ===
-//NA//
-=== Brief description ===
-Belongs to the germin-like proteins family (Wichmann //et al.//, 2011).
-----
-==== Candidate gene: rg6_008b_d08 ====
-=== Synonyms ===
-//NA//
-=== Source ===
-LmB-01 (Syn1 progeny).
-=== Status (identified, mapped, cloned, sequenced) ===
-Mapped on LG4.
-=== Molecular markers ===
-//NA//
-=== Brief description ===
-Belongs to the <del>synaptoverbin</del> synaptobrevin-like vesicle-associated membrane protein <del>family</del> (Wichmann //et al.//, 2011) — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 15:26//—.
-----
-==== Candidate gene: ve_007b_e10 ====
-=== Synonyms ===
-MFS18.
-=== Source ===
-LmB-01 (Syn1 progeny).
-=== Status (identified, mapped, cloned, sequenced) ===
-Identified.
-=== Molecular markers ===
-//NA//
-=== Brief description ===
-Flowering gene (Wichmann //et al.//, 2011).
-----
-==== Candidate gene: gsa_007c_h09 ====
-=== Synonyms ===
-MFS18.
-=== Source ===
-LmB-01 (Syn1 progeny).
-=== Status (identified, mapped, cloned, sequenced) ===
-Identified.
-=== Molecular markers ===
-//NA//
-=== Brief description ===
-Ankyrin (ANK) repeat protein<sup><font 11.0pt/inherit;;#333333;;inherit>[3</font> </sup>   <sup><font 11.0pt/inherit;;#333333;;white>]</font>  </sup>   .
-----
-==== Candidate gene: AT5G47850; CRINKLY4-related protein — Jaroslav Michalko 2020/06/18 15:35 — ====
-=== Synonyms ===
-//NA//
-=== Source ===
-Xtg-ART (M2289 x Adret).
-=== Status (identified, mapped, cloned, sequenced) ===
-Mapped on LG4.
-=== Molecular markers ===
-SNP markers.
-=== Brief description ===
-Serine/threonine protein kinase-like CCR4-related protein<sup><font 11.0pt/inherit;;#333333;;inherit>[4</font> </sup>   <sup><font 11.0pt/inherit;;#333333;;white>]</font>  </sup>   .
-----
-==== Candidate gene: AT3G07960; SWEET17 — Jaroslav Michalko 2020/06/18 15:37 — ====
-=== Synonyms ===
-//NA//
-=== Source ===
-Xtg-ART (M2289 x Adret).
-=== Status (identified, mapped, cloned, sequenced) ===
-Mapped on LG4.
-=== Molecular markers ===
-SNP markers.
-=== Brief description ===
-Belongs to the nodulin MtN3 family protein <sup><font 11.0pt/inherit;;#333333;;inherit>[4</font> </sup>   <sup><font 11.0pt/inherit;;#333333;;white>]</font>  </sup>   .
-----
-==== Candidate gene: Brassinosteroid Insensitive 1 (BRI1)-associated kinase-interacting receptor-like kinase 1 ====
-=== Synonyms ===
-BAK1.
-=== Source ===
-Xtg-ART (M2289 x Adret).
-=== Status (identified, mapped, cloned, sequenced) ===
-Mapped on LG4.
-=== Molecular markers ===
-SNP markers.
-=== Brief description ===
-Belongs to the<del> nodulin MtN3 family protein</del> BAK1- interacting receptor-like kinase 1 <sup><font 11.0pt/inherit;;#333333;;inherit>[4</font> </sup>   <sup><font 11.0pt/inherit;;#333333;;white>]</font>  </sup>   — //[[jaroslav.michalko@gmail.com|Jaroslav Michalko]] 2020/06/18 15:40//— FIXME
-----
-===== References =====
-<sup><font 11.0pt/inherit;;#333333;;inherit>[</font> </sup>   <sup><font 11.0pt/inherit;;#333333;;white>1]</font>  </sup>   Studer B, Boller B, Herrmann D, Bauer E, Posselt UK, Widmer F, Kölliker R (2006). Genetic mapping reveals a single major QTL for bacterial wilt resistance in Italian ryegrass (//Lolium multiflorum// Lam.). Theor. Appl. Genet. 113: 661-671. DOI: [[https://doi.org/10.1007/s00122-006-0330-2|10.1007/s00122-006-0330-2]]
-<sup><font 11.0pt/inherit;;#333333;;inherit>[2</font> </sup>   <sup><font 11.0pt/inherit;;#333333;;white>]</font>  </sup>   Rechsteiner MP, Widmer F, Kölliker R (2006). Expression profiling of Italian ryegrass (Lolium multiflorum Lam.) during infection with the bacterial wilt inducing pathogen //Xanthomonas translucens// pv. //graminis//. Plant Breeding 125: 43-51. DOI: [[https://doi.org/10.1111/j.1439-0523.2006.01170.x|10.1111/j.1439-0523.2006.01170.x]]
-<sup><font 11.0pt/inherit;;#333333;;inherit>[3</font> </sup>   <sup><font 11.0pt/inherit;;#333333;;white>]</font>  </sup>   Wichmann F, Asp T, Widmer F, Kölliker R (2011). Transcriptional responses of Italian ryegrass during interaction with //Xanthomonas translucens// pv. //graminis// reveal novel candidate genes for bacterial wilt resistance. Theor. Appl. Genet. 122: 567-579. DOI: [[https://doi.org/10.1007/s00122-010-1470-y|10.1007/s00122-010-1470-y]]
-<sup><font 11.0pt/inherit;;#333333;;inherit>[4</font> </sup>   <sup><font 11.0pt/inherit;;#333333;;white>]</font>  </sup>   Knorst V, Byrne S, Yates S, Asp T, Widmer F, Studer B, Kölliker R (2019). Pooled DNA sequencing to identify SNPs associated with a major QTL for bacterial wilt resistance in Italian ryegrass (//Lolium multiflorum// Lam.). Theor. Appl. Genet. 132: 947-958. DOI: [[https://doi.org/10.1007/s00122-018-3250-z|10.1007/s00122-018-3250-z]]
-----
-===== Further reading =====
-Sapkota S, Mergoum M, Liu Z (2020). The translucens group of //Xanthomonas translucens//: Complicated and important pathogens causing bacterial leaf streak on cereals. Mol. Plant Pathol. 21: 291‐302. DOI: [[https://doi.org/10.1111/mpp.12909|doi:10.1111/mpp.12909]]

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