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bacteria:t3e:xopad [2020/05/28 14:18] lnoel |
bacteria:t3e:xopad [2020/07/09 12:21] rkoebnik [XopAD] |
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====== XopAD ====== | ====== XopAD ====== | ||
- | Author: David Studholme\\ | + | Author: |
- | Internal reviewer: Laurent Noël\\ | + | Internal reviewer: |
Expert reviewer: FIXME | Expert reviewer: FIXME | ||
Class: XopAD\\ | Class: XopAD\\ | ||
Family: XopAD\\ | Family: XopAD\\ | ||
- | Prototype: XopAD (// | + | Prototype: XopAD (// |
RefSeq ID: not found in RefSeq. GenBank accession: [[https:// | RefSeq ID: not found in RefSeq. GenBank accession: [[https:// | ||
3D structure: Unknown | 3D structure: Unknown | ||
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=== Regulation === | === Regulation === | ||
- | Not known. | + | No PIP box was found in the promoter region of //xopAD// in //X. euvesicatoria// |
+ | |||
+ | qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //xopAD//, were significantly reduced in the // | ||
=== Phenotypes === | === Phenotypes === | ||
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=== In xanthomonads === | === In xanthomonads === | ||
- | Yes. XopAD has homologues encoded in the genomes of most // | + | Yes. XopAD has homologues encoded in the genomes of most // |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
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===== References ===== | ===== References ===== | ||
- | Escalon A //et al.// (2013). Variations in type III effector repertoires, | + | Escalon A, Javegny S, Vernière C, Noël LD, Vital K, Poussier S, Hajri A, Boureau T, Pruvost O, Arlat M, Gagnevin L (2013). Variations in type III effector repertoires, |
+ | |||
+ | Harrison J, Studholme DJ (2014). Draft genome sequence of // | ||
- | Harrison | + | Liu Y, Long J, Shen D, Song C (2016). // |
- | Peeters N //et al.// (2013). Repertoire, unified nomenclature and evolution of the Type III effector gene set in the //Ralstonia solanacearum// | + | Peeters N, Carrère S, Anisimova M, Plener L, Cazalé AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the type III effector gene set in the //Ralstonia solanacearum// |
- | Studholme DJ //et al.// (2010). Genome-wide sequencing data reveals virulence factors implicated in banana // | + | Studholme DJ, Kemen E, MacLean D, Schornack S, Aritua V, Thwaites R, Grant M, Smith J, Jones JD (2010). Genome-wide sequencing data reveals virulence factors implicated in banana // |
- | Teper D //et al.// (2016). Identification of novel // | + | Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel // |
- | Vicente JG, Rothwell S, Holub EB, Studholme DJ (2017). Pathogenic, phenotypic and molecular characterisation of // | + | Vicente JG, Rothwell S, Holub EB, Studholme DJ (2017). Pathogenic, phenotypic and molecular characterisation of // |
- | Wasukira A //et al.// (2012). Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen // | + | Wasukira A, Tayebwa J, Thwaites R, Paszkiewicz K, Aritua V, Kubiriba J, Smith J, Grant M, Studholme DJ (2012). Genome-wide sequencing reveals two major sub-lineages in the genetically monomorphic pathogen // |