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bacteria:t3e:xopad [2020/07/02 16:07] rkoebnik [References] |
bacteria:t3e:xopad [2020/08/11 11:07] rkoebnik [Conservation] |
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====== XopAD ====== | ====== XopAD ====== | ||
- | Author: David Studholme\\ | + | Author: |
- | Internal reviewer: Laurent Noël\\ | + | Internal reviewer: |
Expert reviewer: FIXME | Expert reviewer: FIXME | ||
Class: XopAD\\ | Class: XopAD\\ | ||
Family: XopAD\\ | Family: XopAD\\ | ||
- | Prototype: XopAD (// | + | Prototype: XopAD (// |
RefSeq ID: not found in RefSeq. GenBank accession: [[https:// | RefSeq ID: not found in RefSeq. GenBank accession: [[https:// | ||
3D structure: Unknown | 3D structure: Unknown | ||
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No PIP box was found in the promoter region of //xopAD// in //X. euvesicatoria// | No PIP box was found in the promoter region of //xopAD// in //X. euvesicatoria// | ||
- | qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //xopAD//, were significantly reduced in the // | + | qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //xopAD//, were significantly reduced in the // |
=== Phenotypes === | === Phenotypes === | ||
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=== In xanthomonads === | === In xanthomonads === | ||
- | Yes. XopAD has homologues encoded in the genomes of most // | + | Yes. XopAD has homologues encoded in the genomes of most // |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
Yes. XopAD is homologous to members of the RipS1 family of effectors in //Ralstonia solanacearum// | Yes. XopAD is homologous to members of the RipS1 family of effectors in //Ralstonia solanacearum// | ||
+ | |||
===== References ===== | ===== References ===== | ||
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Harrison J, Studholme DJ (2014). Draft genome sequence of // | Harrison J, Studholme DJ (2014). Draft genome sequence of // | ||
- | Liu Y, Long J, Shen D, Song C (2016). Xanthomonas oryzae pv. oryzae requires H-NS-family protein XrvC to regulate virulence during rice infection. FEMS Microbiol. Lett. 363: fnw067. DOI: [[https:// | + | Liu Y, Long J, Shen D, Song C (2016). |
Peeters N, Carrère S, Anisimova M, Plener L, Cazalé AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the type III effector gene set in the //Ralstonia solanacearum// | Peeters N, Carrère S, Anisimova M, Plener L, Cazalé AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the type III effector gene set in the //Ralstonia solanacearum// |