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bacteria:t3e:xopae [2020/06/12 10:00] rkoebnik [XopAE] |
bacteria:t3e:xopae [2020/09/10 18:32] rkoebnik [Conservation] |
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====== XopAE ====== | ====== XopAE ====== | ||
- | Author: Guido Sessa\\ | + | Author: |
- | Internal reviewer: David Studholme\\ | + | Internal reviewer: |
- | Expert reviewer: | + | Expert reviewer: |
Class: XopAE\\ | Class: XopAE\\ | ||
- | Family: XopAE family\\ | + | Family: XopAE\\ |
- | Prototype: XopAE (// | + | Prototype: XopAE (// |
RefSeq ID: [[https:// | RefSeq ID: [[https:// | ||
- | 3D structure: E3 ubiquitin ligase, based on homology modelling. | + | Synonyms: XopAE was also referred to as HpaF (Kim //et al.//, 2003; Sugio //et al.//, 2005). In //Xcv// strain 85-10, the gene is bipartite and the two parts were first coined //hpaF// and //hpaG// (Noël //et al.//, 2002). Be careful: //hpaG// was also used in other Xanthomonas to designate the homolog of //hpa1// (//X. campestris//, |
+ | 3D structure: | ||
===== The locus ===== | ===== The locus ===== | ||
- | The //xopAE// locus in the majority of the // | + | The //xopAE// locus in the majority of the // |
===== Biological function ===== | ===== Biological function ===== | ||
=== How discovered? === | === How discovered? === | ||
- | XopAE was discovered by DNA sequencing of the //X. euvesicatoria// | + | XopAE was discovered by studying // |
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
- | XopAE preceded by //hpaF// was fused to the AvrBs2 reporter and shown to translocate into plant cells in an // | + | XopAE< |
=== Regulation === | === Regulation === | ||
In //X. euvesicatoria// | In //X. euvesicatoria// | ||
- | |||
=== Phenotypes === | === Phenotypes === | ||
- | XopAE< | + | XopAE< |
=== Localization === | === Localization === | ||
- | Cytoplasm | + | XopAE< |
=== Enzymatic function === | === Enzymatic function === | ||
- | XopAE is an active E3 ubiquitin ligase //in vitro// (Popov //et al//., 2018). | + | XopAE< |
=== Interaction partners === | === Interaction partners === | ||
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=== In xanthomonads === | === In xanthomonads === | ||
- | Yes (//e.g.//, the //xopAE// locus is present in sequenced genomes of //X. alfalfae//, //X. euvesicatoria//, | + | Yes (Popov //et al//., 2018). The //xopAE// locus is present in sequenced genomes of //X. alfalfae//, //X. euvesicatoria//, |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
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Popov G, Majhi BB, Sessa G (2018). Effector gene //xopAE// of // | Popov G, Majhi BB, Sessa G (2018). Effector gene //xopAE// of // | ||
- | Sugio A, Yang B, White FF (2005). Characterization of the //hrpF// pathogenicity peninsula of // | + | Sugio A, Yang B, White FF (2005). Characterization of the //hrpF// pathogenicity peninsula of // |
+ | |||
+ | ===== Further reading ===== | ||
+ | |||
+ | Zhao S, Mo WL, Wu F, Tang W, Tang JL, Szurek B, Verdier V, Koebnik R, Feng JX (2013). Identification of non-TAL effectors in // | ||