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bacteria:t3e:xopae [2020/08/13 11:51] lnoel |
bacteria:t3e:xopae [2020/09/10 18:32] (current) rkoebnik [Conservation] |
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Prototype: XopAE (// | Prototype: XopAE (// | ||
RefSeq ID: [[https:// | RefSeq ID: [[https:// | ||
- | Synonyms: XopAE was also referred to as HpaF (Kim //et al.//, 2003; Sugio //et al.//, 2005). In //Xcv// strain 85-10, the gene is bipartite and the two parts were first coined //hpaF// and //hpaG// (Noël //et al.//, 2002). | + | Synonyms: XopAE was also referred to as HpaF (Kim //et al.//, 2003; Sugio //et al.//, 2005). In //Xcv// strain 85-10, the gene is bipartite and the two parts were first coined //hpaF// and //hpaG// (Noël //et al.//, 2002). |
- | 3D structure: Most XopAE pocesses a N-terminal leucine-rich repeat (LRR) domain and a C-terminal XL box motif with an E3 ubiquitin ligase fold, based on homology modelling. Predicted fold of XopAE C terminus is similar to that of XopL (Popov //et al//., 2018). | + | 3D structure: Most XopAE pocesses a N-terminal leucine-rich repeat (LRR) domain and a C-terminal XL box motif with an E3 ubiquitin ligase fold, based on homology modelling |
===== The locus ===== | ===== The locus ===== | ||
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=== How discovered? === | === How discovered? === | ||
- | XopAE was discovered by studying // | + | XopAE was discovered by studying // |
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
- | XopAE preceded by //hpaF// was fused to the AvrBs2 reporter and shown to translocate into plant cells in an // | + | XopAE< |
=== Regulation === | === Regulation === | ||
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=== Phenotypes === | === Phenotypes === | ||
- | XopAE< | + | XopAE< |
=== Localization === | === Localization === | ||
- | Cytoplasm | + | XopAE< |
=== Enzymatic function === | === Enzymatic function === | ||
- | XopAE is an active E3 ubiquitin ligase //in vitro// (Popov //et al//., 2018). | + | XopAE< |
=== Interaction partners === | === Interaction partners === | ||
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=== In xanthomonads === | === In xanthomonads === | ||
- | Yes (//e.g.//, the //xopAE// locus is present in sequenced genomes of //X. alfalfae//, //X. euvesicatoria//, | + | Yes (Popov //et al//., 2018). The //xopAE// locus is present in sequenced genomes of //X. alfalfae//, //X. euvesicatoria//, |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
Yes. There are homologues in // | Yes. There are homologues in // | ||
+ | |||
===== References ===== | ===== References ===== | ||
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===== Further reading ===== | ===== Further reading ===== | ||
- | |||
- | Popov G, Fraiture M, Brunner F, Sessa G (2016). Multiple // | ||
Zhao S, Mo WL, Wu F, Tang W, Tang JL, Szurek B, Verdier V, Koebnik R, Feng JX (2013). Identification of non-TAL effectors in // | Zhao S, Mo WL, Wu F, Tang W, Tang JL, Szurek B, Verdier V, Koebnik R, Feng JX (2013). Identification of non-TAL effectors in // | ||