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bacteria:t3e:xopap [2020/07/01 10:24] rkoebnik [References] |
bacteria:t3e:xopap [2021/01/25 21:41] (current) rkoebnik |
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====== XopAP ====== | ====== XopAP ====== | ||
- | Author: Saul Burdman\\ | + | Author: |
- | Internal reviewer: | + | Internal reviewer: |
- | Expert reviewer: | + | Expert reviewer: |
Class: XopAP\\ | Class: XopAP\\ | ||
Family: XopAP\\ | Family: XopAP\\ | ||
- | Prototype: XopAP (// | + | Prototype: XopAP (// |
RefSeq ID: [[https:// | RefSeq ID: [[https:// | ||
3D structure: Unknown | 3D structure: Unknown | ||
+ | |||
+ | ===== ===== | ||
===== Biological function ===== | ===== Biological function ===== | ||
=== How discovered? === | === How discovered? === | ||
- | XopAP (XCV3138 in //X. euvesicatoria// | ||
+ | XopAP ([[http:// | ||
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
- | XopAP fused to the AvrBs2 reporter, was shown to translocate into plant cells in an // | ||
+ | XopAP fused to the AvrBs2 reporter, was shown to translocate into plant cells in an // | ||
=== Regulation === | === Regulation === | ||
- | Unknown. In //X. euvesicatoria// | ||
+ | In //X. euvesicatoria// | ||
=== Phenotypes === | === Phenotypes === | ||
- | A // | ||
- | XopAP shares similarity with the //Ralstonia solanacearum// | ||
+ | A // | ||
+ | |||
+ | XopAP was shown to be induced in //X. citri// subsp. //citri// strain 306 in nutrient broth (NB; Jalan //et al//., 2013). | ||
=== Localization === | === Localization === | ||
- | Unknown. Subcellular localization analyses of the //R. solanacearum// | ||
+ | Unknown. Subcellular localization analyses of the //R. solanacearum// | ||
=== Enzymatic function === | === Enzymatic function === | ||
- | Unknown. XopAL contains a putative lipase domain (lipase class 3 family domain; conserved protein domain family PLN03037) in amino acid positions 236-322 (Teper //et al//., 2016). | ||
+ | Unknown. XopAP contains a putative lipase domain (lipase class 3 family domain; conserved protein domain family [[https:// | ||
=== Interaction partners === | === Interaction partners === | ||
+ | |||
Unknown. | Unknown. | ||
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=== In xanthomonads === | === In xanthomonads === | ||
- | Yes (//e.g.,// //X. campestris//, | ||
+ | Yes (//e.g.,// //X. campestris//, | ||
=== In other plant pathogens/ | === In other plant pathogens/ | ||
- | Yes (// | ||
+ | Yes (// | ||
===== References ===== | ===== References ===== | ||
+ | |||
+ | Constantin EC, Haegeman A, Van Vaerenbergh J, Baeyen S, Van Malderghem C, Maes M, Cottyn B (2017). Pathogenicity and virulence gene content of // | ||
+ | |||
+ | Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC, Wang N (2013). Comparative genomic and transcriptome analyses of pathotypes of // | ||
Nakano M, Mukaihara T (2018). //Ralstonia solanacearum// | Nakano M, Mukaihara T (2018). //Ralstonia solanacearum// | ||
Peeters N, Carrere S, Anisimova M, Plener L, Cazale AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the type III effector gene set in the //Ralstonia solanacearum// | Peeters N, Carrere S, Anisimova M, Plener L, Cazale AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the type III effector gene set in the //Ralstonia solanacearum// | ||
+ | |||
+ | Peng, Z., Hu, Y., Xie, J., Potnis N, Akhunova A, Jones J, Liu Z, White FJ, Liu S (2016). Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of // | ||
Popov G, Fraiture M, Brunner F, Sessa G (2018). Multiple // | Popov G, Fraiture M, Brunner F, Sessa G (2018). Multiple // | ||
+ | |||
+ | Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics 12: 146. DOI: [[https:// | ||
Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel // | Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel // | ||
+ | |||
+ | Zhang Y, Teper D, Xu J, Wang N (2019). Stringent response regulators (p)ppGpp and DksA positively regulate virulence and host adaptation of Xanthomonas citri. Mol. Plant Pathol. 20: | ||