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bacteria:t3e:xope3 [2020/08/11 15:10] setubal |
bacteria:t3e:xope3 [2020/09/21 10:37] (current) rkoebnik [Biological function] |
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=== How discovered? === | === How discovered? === | ||
- | XopE3 (avrXacE2) was first identified | + | The gene coding for XopE3 (avrXacE2) was first identified |
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
- | Homology | + | There is no experimental evidence. It is inferred to be a T3E based on similarity |
=== Regulation === | === Regulation === | ||
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Lesions caused by mutants of X. citri on avrXacE2 show more extensive necrotic areas relative to those caused by wild-type bacteria in citrus leaves and grow slowly compared to wild type strain. This protein may function to attenuate cell death. No effect has been revealed on hypersensitive response (HR) on non-host plants (Dunger //et al//., 2012). | Lesions caused by mutants of X. citri on avrXacE2 show more extensive necrotic areas relative to those caused by wild-type bacteria in citrus leaves and grow slowly compared to wild type strain. This protein may function to attenuate cell death. No effect has been revealed on hypersensitive response (HR) on non-host plants (Dunger //et al//., 2012). | ||
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- | Conservation of XopE3 (avrXacE2) in three // | ||
=== Localization === | === Localization === | ||
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=== Enzymatic function === | === Enzymatic function === | ||
- | XopE3 belongs to the HopX effector family, which are part of the transglutaminase superfamily (Nimchuk //et al//., 2007). | + | XopE3 belongs to the HopX effector family, which is part of the transglutaminase superfamily (Nimchuk //et al//., 2007). |
=== Interaction partners === | === Interaction partners === | ||
- | Not known. | + | In //X. citri //subsp. //citri //A306 the gene coding for XopE3 is in a region hypothesized to be a genomic island (Moreira //et al.//, 2010). This region or parts of it are conserved in many Xanthomonas strains, as shown by a genomic neighborhood search in the Integrated Microbial Genomes platform. In particular, in this search gene XAC3225 is nearly always adjacent to XAC3224 (// |
===== Conservation ===== | ===== Conservation ===== | ||
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===== References ===== | ===== References ===== | ||
- | da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira, MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA,Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos SM, Truffi D, Tsai, SM, White FF, Setubal JC, Kitajima JP (2002). Comparison of the genomes of two // | + | da Silva AC, Ferro JA, Reinach FC, Farah CS, Furlan LR, Quaggio RB, Monteiro-Vitorello CB, Van Sluys MA, Almeida NF, Alves LM, do Amaral AM, Bertolini MC, Camargo LE, Camarotte G, Cannavan F, Cardozo J, Chambergo F, Ciapina LP, Cicarelli RM, Coutinho LL, Cursino-Santos JR, El Dorry H, Faria JB, Ferreira AJ, Ferreira RC, Ferro MI, Formighieri EF, Franco MC, Greggio CC, Gruber A, Katsuyama AM, Kishi LT, Leite RP, Lemos EG, Lemos MV, Locali EC, Machado MA, Madeira AM, Martinez-Rossi NM, Martins EC, Meidanis J, Menck CF, Miyaki CY, Moon DH, Moreira LM, Novo MT, Okura VK, Oliveira, MC, Oliveira VR, Pereira HA, Rossi A, Sena JA, Silva C, de Souza RF, Spinola LA,Takita MA, Tamura RE, Teixeira EC, Tezza RI, Trindade dos SM, Truffi D, Tsai, SM, White FF, Setubal JC, Kitajima JP (2002). Comparison of the genomes of two // |
+ | |||
+ | Dunger G, Garofalo CG, Gottig N, Garavaglia BS, Rosa MC, Farah CS, Orellano EG, Ottado J (2012). Analysis of three // | ||
+ | |||
+ | Guo Y, Figueiredo F, Jones J, Wang N (2011). HrpG and HrpX play global roles in coordinating different virulence traits of // | ||
- | Dunger G, Garofalo CG, Gottig N, Garavaglia BS, Rosa MC, Farah CS, Orellano EG, Ottado J (2012). Analysis | + | Laia ML, Moreira LM, Dezajacomo J, Brigati JB, Ferreira CB, Ferro MI, Silva AC, Ferro JA, Oliveira JC (2009). New genes of // |
- | Guo Y, Figueiredo F, Jones J, Wang N (2011). HrpG and HrpX play global roles in coordinating different virulence traits | + | Moreira LM, Almeida NF, Potnis |
- | Moreira LM, Almeida NF, Potnis N, Digiampietri LA, Adi SS, Bortolossi JC, da Silva AC, da Silva AM, de Moraes FE, de Oliveira JC, de Souza RF (2010). Novel insights into the genomic basis of citrus canker based on the genome sequences of two strains of Xanthomonas fuscans subsp. aurantifolii. BMC Genomics 11: 238. DOI: [[https:// | + | Nimchuk ZL, Fisher EJ, Desvaux D, Chang JH, Dangl JL (2007). The HopX (AvrPphE) family |
- | Nimchuk ZL, Fisher EJ, Desvaux D, Chang JH, Dangl JL (2007). | + | Oh HS, Kvitko BH, Morello JE, Collmer A (2007). // |