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plant:rice [2020/09/23 19:37]
rkoebnik [References] 		plant:rice [2022/12/19 16:50]
rkoebnik [Resistance gene: //Xa47//]
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 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Sidhu //et al.//, 1978). Mapped on chromosome 6 (Lee & Khush, 2000; Porter //et al.//, 2003).+Identified (Sidhu //et al.//, 1978). Mapped on chromosome 6 (Lee & Khush, 2000; Porter //et al.//, 2003). Cloned & sequenced (Chen //et al.//, 2021; Luo //et al.//, 2021).
 === Molecular markers === === Molecular markers ===
  
Line 161: Line 161:
 === Brief description === === Brief description ===
  
-//NA//+Cognate avirulence genes: //avrXa7//, //pthXo3// (Hopkins //et al.//, 1992; Yang //et al.//, 2000; Yang & White, 2004).
  
 ---- ----
Line 450: Line 450:
 === Molecular markers === === Molecular markers ===
  
-RAPD and RFLP markers (Ronald //et al.//, 1992).+RAPD and RFLP markers (Ronald //et al.//, 1992). Intragenic AFLP marker (Nanayakkara //et al.//, 2020).
 === Brief description === === Brief description ===
  
Line 844: Line 844:
 === Synonyms === === Synonyms ===
  
-//NA//+//Xa30(t)//
 === Source === === Source ===
  
Line 850: Line 850:
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
-Identified (Kaur //et al.//, 2006; Cheema //et al.//, 2008).+Identified (Kaur //et al.//, 2006). Mapped on long arm of chromosome 4 (Cheema //et al.//, 2008).
 === Molecular markers === === Molecular markers ===
  
-//NA//+SSR markers (Cheema //et al.//, 2008).
 === Brief description === === Brief description ===
  
Line 915: Line 915:
 === Molecular markers === === Molecular markers ===
  
-//NA//+Intragenic AFLP marker (Hutin //et al.//, 2015).
 === Brief description === === Brief description ===
  
Line 994: Line 994:
 === Source === === Source ===
  
-//NA//+//Oryza glaberrima// accession IRGC 102600B.
 === Status (identified, mapped, cloned, sequenced) === === Status (identified, mapped, cloned, sequenced) ===
  
Line 1027: Line 1027:
  
 [[https://funricegenes.github.io/Xa46(t)/|FunRiceGenes]]. [[https://funricegenes.github.io/Xa46(t)/|FunRiceGenes]].
 +
 +----
 +
 +==== Resistance gene: //Xa47// ====
 +
 +=== Synonyms ===
 +
 +//NA//
 +=== Source ===
 +
 +G252, a BC2F16 generation material of the Yuanjiang common wild rice infiltration line (Lu //et al.//, 2022).
 +=== Status (identified, mapped, cloned, sequenced) ===
 +
 +Mapped on chromosome 11 (Lu //et al.//, 2022). Cloned and sequenced (Lu //et al.//, 2022).
 +=== Molecular markers ===
 +
 +Hxjy-1F/R and Xa47-12F/R (Lu //et al.//, 2022).
 +=== Brief description ===
 +
 +NB-LRR class protein (Lu //et al.//, 2022).
  
 ---- ----
Line 1034: Line 1054:
 ==== Resistance gene: //Rxo1// ==== ==== Resistance gene: //Rxo1// ====
  
-=== Synonyms ===+Synonyms
  
 //Rba1//. //Rba1//.
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 ==== Resistance gene: //Xo1// ==== ==== Resistance gene: //Xo1// ====
  
-=== Synonyms ===+Synonyms
  
 //NA// //NA//
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 NB-LRR class protein with a zinc finger BED domain (Read //et al//., 2020). Cognate avirulence genes: TAL effector genes. NB-LRR class protein with a zinc finger BED domain (Read //et al//., 2020). Cognate avirulence genes: TAL effector genes.
 +
 +----
 +
 +==== Resistance gene: //Xo2// ====
 +
 +Synonyms
 +
 +//NA//
 +=== Source ===
 +
 +Cultivar BHADOIA 303 (X455) from Bangladesh.
 +
 +=== Status (identified, mapped, cloned, sequenced) ===
 +
 +Mapped on chromosome 2 (Chen //et al.//, 2022).
 +=== Molecular markers ===
 +
 +//NA//
 +=== Brief description ===
 +
 +Candidate gene: //Osa002T0115800// (Chen //et al//., 2022).
  
 ---- ----
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 Cheema KK, Grewal NK, Vikal Y, Sharma R, Lore JS, Das A, Bhatia D, Mahajan R, Gupta V, Bharaj TS, Singh K (2008). A novel bacterial blight resistance gene from //Oryza nivara// mapped to 38 Kb region on chromosome 4L and transferred to //Oryza sativa// L. Genet. Res. 90: 397-407. DOI: [[https://doi.org/10.1017/S0016672308009786|10.1017/S0016672308009786]] Cheema KK, Grewal NK, Vikal Y, Sharma R, Lore JS, Das A, Bhatia D, Mahajan R, Gupta V, Bharaj TS, Singh K (2008). A novel bacterial blight resistance gene from //Oryza nivara// mapped to 38 Kb region on chromosome 4L and transferred to //Oryza sativa// L. Genet. Res. 90: 397-407. DOI: [[https://doi.org/10.1017/S0016672308009786|10.1017/S0016672308009786]]
  
-Chen H, Wang S, Zhang Q (2002). New gene for bacterial blight resistance in rice located on chromosome 12 identified from Minghui 63, an elite restorer line. Phytopathology 92: 750-754. DOI: [[https://doi.org/10.1094/PHYTO.2002.92.7.750|10.1094/PHYTO.2002.92.7.750]]+Chen S, Feng A, Wang C, Zhao J, Feng J, Chen B, Yang J, Wang W, Zhang M, Chen K, Chen W, Su J, Liu B, Zhu X (2022). Identification and fine-mapping of //Xo2//, a novel rice bacterial leaf streak resistance gene. Theor. Appl. Genet., in press. DOI: [[https://doing.org/10.1007/s00122-022-04179-9|10.1007/s00122-022-04179-9]] 
 + 
 +Chen X, Liu P, Mei L, He X, Chen L, Liu H, Shen S, Ji Z, Zheng X, Zhang Y, Gao Z, Zeng D, Qian Q, Ma B (2021). //Xa7//, a new executor //R// gene that confers durable and broad-spectrum resistance to bacteria-blight disease in rice. Plant Commun. 2: 100143. DOI: [[https://doi.org/10.1016/j.xplc.2021.100143|10.1016/j.xplc.2021.100143]]
  
 Chen S, Wang C, Yang J, Chen B, Wang W, Su J, Feng A, Zeng L, Zhu X (2020). Identification of the novel bacterial blight resistance gene //Xa46 (t)// by mapping and expression analysis of the rice mutant H120. Sci. Rep. 10: 12642. DOI: [[https://doi.org/10.1038/s41598-020-69639-y|10.1038/s41598-020-69639-y]] Chen S, Wang C, Yang J, Chen B, Wang W, Su J, Feng A, Zeng L, Zhu X (2020). Identification of the novel bacterial blight resistance gene //Xa46 (t)// by mapping and expression analysis of the rice mutant H120. Sci. Rep. 10: 12642. DOI: [[https://doi.org/10.1038/s41598-020-69639-y|10.1038/s41598-020-69639-y]]
 +
 +Chen H, Wang S, Zhang Q (2002). New gene for bacterial blight resistance in rice located on chromosome 12 identified from Minghui 63, an elite restorer line. Phytopathology 92: 750-754. DOI: [[https://doi.org/10.1094/PHYTO.2002.92.7.750|10.1094/PHYTO.2002.92.7.750]]
  
 Chu Z, Yuan M, Yao J, Ge X, Yuan B, Xu C, Li X, Fu B, Li Z, Bennetzen JL, Zhang Q, Wang S (2006). Promoter mutations of an essential gene for pollen development result in disease resistance in rice. Genes Dev. 20: 1250-1255. DOI: [[https://doi.org/10.1101/gad.1416306|10.1101/gad.1416306]] Chu Z, Yuan M, Yao J, Ge X, Yuan B, Xu C, Li X, Fu B, Li Z, Bennetzen JL, Zhang Q, Wang S (2006). Promoter mutations of an essential gene for pollen development result in disease resistance in rice. Genes Dev. 20: 1250-1255. DOI: [[https://doi.org/10.1101/gad.1416306|10.1101/gad.1416306]]
Line 1112: Line 1157:
  
 He Q, Li D, Zhu Y, Tan M, Zhang D, Lin X (2006). Fine mapping of //Xa2//, a bacterial blight resistance gene in rice. Mol. Breed. 17: 1-6. DOI: [[https://doi.org/10.1007/s11032-005-8698-2|10.1007/s11032-005-8698-2]] He Q, Li D, Zhu Y, Tan M, Zhang D, Lin X (2006). Fine mapping of //Xa2//, a bacterial blight resistance gene in rice. Mol. Breed. 17: 1-6. DOI: [[https://doi.org/10.1007/s11032-005-8698-2|10.1007/s11032-005-8698-2]]
 +
 +Hopkins CM, White FF, Choi SH, Guo A, Leach JE (1992). Identification of a family of avirulence genes from //Xanthomonas oryzae// pv. //oryzae//. Mol. Plant Microbe Interact. 5: 451-459. DOI: [[https://doi.org/10.1094/mpmi-5-451|10.1094/mpmi-5-451]]
  
 Hu K, Cao J, Zhang J, Xia F, Ke Y, Zhang H, Xie W, Liu H, Cui Y, Cao Y, Sun X, Xiao J, Li X, Zhang Q, Wang S (2017). Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement. Nat. Plants 3: 17009. DOI: [[https://doi.org/10.1038/nplants.2017.9|10.1038/nplants.2017.9]] Hu K, Cao J, Zhang J, Xia F, Ke Y, Zhang H, Xie W, Liu H, Cui Y, Cao Y, Sun X, Xiao J, Li X, Zhang Q, Wang S (2017). Improvement of multiple agronomic traits by a disease resistance gene via cell wall reinforcement. Nat. Plants 3: 17009. DOI: [[https://doi.org/10.1038/nplants.2017.9|10.1038/nplants.2017.9]]
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 Liu Q, Yuan M, Zhou Y, Li X, Xiao J, Wang S (2011). A paralog of the MtN3/saliva family recessively confers race-specific resistance to //Xanthomonas oryzae// in rice. Plant Cell Environ. 34: 1958-1969. DOI: [[https://doi.org/10.1111/j.1365-3040.2011.02391.x|10.1111/j.1365-3040.2011.02391.x]] Liu Q, Yuan M, Zhou Y, Li X, Xiao J, Wang S (2011). A paralog of the MtN3/saliva family recessively confers race-specific resistance to //Xanthomonas oryzae// in rice. Plant Cell Environ. 34: 1958-1969. DOI: [[https://doi.org/10.1111/j.1365-3040.2011.02391.x|10.1111/j.1365-3040.2011.02391.x]]
 +
 +Luo D, Huguet-Tapia JC, Taylor Raborn R, White FF, Brendel VP, Yang B (2021). The //Xa7// resistance gene guards the susceptibility gene //SWEET14// of rice against exploitation by bacterial blight pathogen. Nat. Commun., in press. DOI: [[https://doi.org/10.1016/j.xplc.2021.100164|10.1016/j.xplc.2021.100164]]
  
 Mew TW (1987). Current status and future prospects of research on bacterial blight of rice. Annu. Rev. Phytopathol. 25: 359-382. DOI: [[https://doi.org/10.1146/annurev.py.25.090187.002043|10.1146/annurev.py.25.090187.002043]] Mew TW (1987). Current status and future prospects of research on bacterial blight of rice. Annu. Rev. Phytopathol. 25: 359-382. DOI: [[https://doi.org/10.1146/annurev.py.25.090187.002043|10.1146/annurev.py.25.090187.002043]]
  
 Miao LL, Wang CL, Zheng C, Che JY, Gao Y, Wen YC, Li GQ, Zhao K (2010). Molecular mapping of a new gene for resistance to rice bacterial blight. Sci. Agric. Sin. 43: 3051-3058. Miao LL, Wang CL, Zheng C, Che JY, Gao Y, Wen YC, Li GQ, Zhao K (2010). Molecular mapping of a new gene for resistance to rice bacterial blight. Sci. Agric. Sin. 43: 3051-3058.
 +
 +Nanayakkara D, Edirisingha I, Dissanayake L, Weerasinghe D, Suriyagoda L, Herath V, Perera C, Jayatilake D (2020). A novel intragenic marker targeting the ectodomain of bacterial blight-resistance gene //Xa21// for marker-assisted selection in rice. J. Crop Improvem., in press. DOI: [[https://doi.org/10.1080/15427528.2020.1771643|10.1080/15427528.2020.1771643]]
  
 Nakai H, Nakamura S, Kuwahara S, Saito M (1988). Genetic studies of an induced rice mutant resistant to multiple races of bacterial leaf blight. Rice Genet. Newsl. 5: 101. Full text @ [[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol5/v5V29.html|Oryzabase]] Nakai H, Nakamura S, Kuwahara S, Saito M (1988). Genetic studies of an induced rice mutant resistant to multiple races of bacterial leaf blight. Rice Genet. Newsl. 5: 101. Full text @ [[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol5/v5V29.html|Oryzabase]]
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 Read AC, Rinaldi FC, Hutin M, He YQ, Triplett LR, Bogdanove AJ (2016). Suppression of //Xo1//-mediated disease resistance in rice by a truncated, non-DNA-binding TAL effector of //Xanthomonas oryzae//. Front. Plant Sci. 7: 1516. DOI: [[https://doi.org/10.3389/fpls.2016.01516|10.3389/fpls.2016.01516]] Read AC, Rinaldi FC, Hutin M, He YQ, Triplett LR, Bogdanove AJ (2016). Suppression of //Xo1//-mediated disease resistance in rice by a truncated, non-DNA-binding TAL effector of //Xanthomonas oryzae//. Front. Plant Sci. 7: 1516. DOI: [[https://doi.org/10.3389/fpls.2016.01516|10.3389/fpls.2016.01516]]
  
-Read AC, Hutin M, Moscou MJ, Rinaldi FC, Bogdanove AJ (2020). Cloning of the rice //Xo1 //resistance gene and interaction of the Xo1 protein with the defense-suppressing //Xanthomonas// effector Tal2h. Mol. Plant Microbe Interact., <font inherit/inherit;;#c0392b;;inherit>in press</font>. DOI: [[https://doi.org/10.1094/MPMI-05-20-0131-SC|10.1094/MPMI-05-20-0131-SC]]+Read AC, Hutin M, Moscou MJ, Rinaldi FC, Bogdanove AJ (2020). Cloning of the rice //Xo1 //resistance gene and interaction of the Xo1 protein with the defense-suppressing //Xanthomonas// effector Tal2h. Mol. Plant Microbe Interact., 
 + <font inherit/inherit;;#c0392b;;inherit>in press</font>  . DOI: [[https://doi.org/10.1094/MPMI-05-20-0131-SC|10.1094/MPMI-05-20-0131-SC]]
  
 Ronald PC, Albano B, Tabien R, Abenes L, Wu KS, McCouch S, Tanksley SD (1992). Genetic and physical analysis of the rice bacterial blight disease resistance locus, //Xa21//. Mol. Gen. Genet. 236: 113-120. DOI: [[https://doi.org/10.1007/BF00279649|10.1007/BF00279649]] Ronald PC, Albano B, Tabien R, Abenes L, Wu KS, McCouch S, Tanksley SD (1992). Genetic and physical analysis of the rice bacterial blight disease resistance locus, //Xa21//. Mol. Gen. Genet. 236: 113-120. DOI: [[https://doi.org/10.1007/BF00279649|10.1007/BF00279649]]
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 Yang B, Sugio A, White FF (2006). //Os8N3// is a host disease-susceptibility gene for bacterial blight of rice. Proc Natl. Acad. Sci. U. S. A. 103: 10503-10508. DOI: [[https://doi.org/10.1073/pnas.0604088103|10.1073/pnas.0604088103]] Yang B, Sugio A, White FF (2006). //Os8N3// is a host disease-susceptibility gene for bacterial blight of rice. Proc Natl. Acad. Sci. U. S. A. 103: 10503-10508. DOI: [[https://doi.org/10.1073/pnas.0604088103|10.1073/pnas.0604088103]]
 +
 +Yang B, Zhu W, Johnson LB, White FF (2000). The virulence factor AvrXa7 of //Xanthomonas oryzae// pv. //oryzae// is a type III secretion pathway-dependent nuclear-localized double-stranded DNA-binding protein. Proc. Natl. Acad. Sci. U. S. A. 97: 9807-9812. DOI: [[https://doi.org/10.1073/pnas.170286897|10.1073/pnas.170286897]]
 +
 +Yang B, White FF (2004). Diverse members of the AvrBs3/PthA family of type III effectors are major virulence determinants in bacterial blight disease of rice. Mol. Plant Microbe Interact. 17: 1192-1200. DOI: [[https://doi.org/10.1094/MPMI.2004.17.11.1192|10.1094/MPMI.2004.17.11.1192]]
  
 Yoshimura A, Mew TW, Khush GS, Omura T (1983). Inheritance of resistance to bacterial blight in rice cultivar Cas 209. Phytopathology 73: 1409-1412. DOI: [[https://doi.org/10.1094/Phyto-73-1409|10.1094/Phyto-73-1409]] Yoshimura A, Mew TW, Khush GS, Omura T (1983). Inheritance of resistance to bacterial blight in rice cultivar Cas 209. Phytopathology 73: 1409-1412. DOI: [[https://doi.org/10.1094/Phyto-73-1409|10.1094/Phyto-73-1409]]
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 Chukwu SC, Rafii MY, Ramlee SI, Ismail SI, Hasan MM, Oladosu YA, Magaji UG, Akos I, Olalekan KK (2019). Bacterial leaf blight resistance in rice: a review of conventional breeding to molecular approach. Mol. Biol. Rep. 46: 1519-1532. DOI: [[https://doi.org/10.1007/s11033-019-04584-2|10.1007/s11033-019-04584-2]] Chukwu SC, Rafii MY, Ramlee SI, Ismail SI, Hasan MM, Oladosu YA, Magaji UG, Akos I, Olalekan KK (2019). Bacterial leaf blight resistance in rice: a review of conventional breeding to molecular approach. Mol. Biol. Rep. 46: 1519-1532. DOI: [[https://doi.org/10.1007/s11033-019-04584-2|10.1007/s11033-019-04584-2]]
 +
 +Ercoli MF, Luu DD, Rim EY, Shigenaga A, Teixeira de Araujo A Jr, Chern M, Jain R, Ruan R, Joe A, Stewart V, Ronald P (2022). Plant immunity: Rice XA21-mediated resistance to bacterial infection. Proc. Natl. Acad. Sci. U. S. A. 119: e2121568119. DOI: [[https://doi.org/10.1073/pnas.2121568119|10.1073/pnas.2121568119]]
  
 Helliwell EE, Yang Y (2013). Molecular strategies to improve rice disease resistance. Methods Mol. Biol. 956: 285-309. DOI: [[https://doi.org/10.1007/978-1-62703-194-3_21|10.1007/978-1-62703-194-3_21]] Helliwell EE, Yang Y (2013). Molecular strategies to improve rice disease resistance. Methods Mol. Biol. 956: 285-309. DOI: [[https://doi.org/10.1007/978-1-62703-194-3_21|10.1007/978-1-62703-194-3_21]]
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 Jiang N, Yan J, Liang Y, Shi Y, He Z, Wu Y, Zeng Q, Liu X, Peng J (2020). Resistance genes and their interactions with bacterial blight/leaf streak pathogens (//Xanthomonas oryzae//) in rice (//Oryza sativa// L.) - an updated review. Rice (N Y) 13: 3. DOI: [[https://doi.org/10.1186/s12284-019-0358-y|10.1186/s12284-019-0358-y]] Jiang N, Yan J, Liang Y, Shi Y, He Z, Wu Y, Zeng Q, Liu X, Peng J (2020). Resistance genes and their interactions with bacterial blight/leaf streak pathogens (//Xanthomonas oryzae//) in rice (//Oryza sativa// L.) - an updated review. Rice (N Y) 13: 3. DOI: [[https://doi.org/10.1186/s12284-019-0358-y|10.1186/s12284-019-0358-y]]
 +
 +Joshi JB, Arul L, Ramalingam J, Uthandi S (2020). Advances in the //Xoo//-rice pathosystem interaction and its exploitation in disease management. J. Biosci. 45: 112. DOI: [[https://doi.org/10.1007/s12038-020-00085-8|10.1007/s12038-020-00085-8]]
  
 Liu W, Liu J, Triplett L, Leach JE, Wang GL (2014). Novel insights into rice innate immunity against bacterial and fungal pathogens. Annu. Rev. Phytopathol. 52: 213-241. DOI: [[https://doi.org/10.1146/annurev-phyto-102313-045926|10.1146/annurev-phyto-102313-045926]] Liu W, Liu J, Triplett L, Leach JE, Wang GL (2014). Novel insights into rice innate immunity against bacterial and fungal pathogens. Annu. Rev. Phytopathol. 52: 213-241. DOI: [[https://doi.org/10.1146/annurev-phyto-102313-045926|10.1146/annurev-phyto-102313-045926]]
plant/rice.txt · Last modified: 2022/12/19 16:53 by rkoebnik

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