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bacteria:t3e:xopz [2020/07/09 12:05] rkoebnik |
bacteria:t3e:xopz [2020/08/02 18:48] jfpothier |
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Author: Marlène Lachaux\\ | Author: Marlène Lachaux\\ | ||
- | Internal reviewer: | + | Internal reviewer: |
Expert reviewer: FIXME | Expert reviewer: FIXME | ||
Class: XopZ\\ | Class: XopZ\\ | ||
Family: XopZ\\ | Family: XopZ\\ | ||
- | Prototype: XopZ (// | + | Prototype: XopZ (// |
- | RefSeq ID: 1,414-amino-acid protein 3D structure: The N-terminus of XopZ< | + | RefSeq ID: 1,414 amino-acid protein |
+ | 3D structure: | ||
===== Biological function ===== | ===== Biological function ===== | ||
=== How discovered? === | === How discovered? === | ||
- | In 2009, generation of PXO99 mutants for 18 non-TAL | + | In 2009, generation of mutants for 18 non-TAL |
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
- | With a PIP box upstream of the predicted translation start site //XopZ< | + | With a PIP box 58 bp upstream of the predicted translation start site, //xopZ< |
=== Regulation === | === Regulation === | ||
- | The //XopZ// gene was shown to be expressed in a // | + | The //xopZ// gene was shown to be expressed in a // |
qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //xopZ//, were significantly reduced in the // | qRT-PCR revealed that transcript levels of 15 out of 18 tested non-TAL effector genes (as well as the regulatory genes //hrpG// and //hrpX//), including //xopZ//, were significantly reduced in the // | ||
=== Phenotypes === | === Phenotypes === | ||
- | PXO99< | + | PXO99< |
=== Localization === | === Localization === | ||
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=== Enzymatic function === | === Enzymatic function === | ||
- | XopZ< | + | XopZ< |
=== Interaction partners === | === Interaction partners === | ||
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=== In xanthomonads === | === In xanthomonads === | ||
- | Yes, is found to be conserved in all // | + | Yes, found to be conserved in all // |
=== In other plant pathogens/ | === In other plant pathogens/ | ||