====== Resistance genes identified in rice (Oryza spp.) ======

Useful resources:

[[https://shigen.nig.ac.jp/rice/oryzabase/quicksearch/|Oryzabase - Search for Xa/xa resistance genes]]

[[http://www.knowledgebank.irri.org/ricebreedingcourse/Breeding_for_disease_resistance_Blight.htm|Breeding for disease resistance in rice: Bacterial blight]]

^Pathogen  ^Resistance gene  ^Brief description  ^Status (identified, mapped, cloned, sequenced)  ^Reference  |
|//X. oryzae// pv. //oryzae//   |//Xa1//   |Source: Rice cultivar 'Kogyoku'; NB-LRR class protein  |Sequenced  |[[https://doi.org/10.1073/pnas.95.4.1663|Yoshimura et al. 1998]]  |
|//X. oryzae// pv. //oryzae//   |//Xa2//   |Source: Rice cultivar 'Tetep'  |Mapped  |[[https://doi.org/10.1007/s11032-005-8698-2|He et al. 2006]]  |
|//X. oryzae// pv. //oryzae//   |//Xa3//   |Identical to //Xa26; //NB-LRR class protein  |Sequenced  |[[https://doi.org/10.1007/s00122-006-0388-x|Xiang et al. 2006]]  |
|//X. oryzae// pv. //oryzae//   |//Xa4//   |Cell wall-associated kinase  |Sequenced  |[[https://doi.org/10.1007/s004380000382|Wang et al. 2001]] \\  [[https://doi.org/10.1038/nplants.2017.9|Hu et al. 2017]]  |
|//X. oryzae// pv. //oryzae//   |//[[:plant:rice:xa5|]]//   |Plant transcription factor, recessive allele of OsTFIIAgamma5 encoding a second form of the TFIIA small subunit  |Sequenced  |[[https://doi.org/10.1094/MPMI.2004.17.12.1348|Iyer & McCouch 2004]]  |
|//X. oryzae// pv. //oryzae//   |//Xa6//   |Identical to //Xa3//   |   |[[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol3/v3V29.html|Ogawa et al. 1986]]  |
|//X. oryzae// pv. //oryzae//   |//Xa7//   |   |Identified  |[[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol17/d28.html|Lee & Kush 2000]]  |
|//X. oryzae// pv. //oryzae//   |//xa8//   |   |Mapped  |[[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol19/b40.html|Singh et al., 2002]] \\  [[https://doi.org/10.5958/0975-6906.2014.00895.5|Vikal et al. 2014]]  |
|//X. oryzae// pv. //oryzae//   |//xa9//   |   |   |   |
|//X. oryzae// pv. //oryzae//   |//Xa10//   |   |Sequenced  |[[https://doi.org/10.1105/tpc.113.119255|Tian et al. 2014]]  |
|//X. oryzae// pv. //oryzae//   |//Xa11//   |   |Mapped  |[[https://doi.org/10.6090/jarq.43.221|Goto et al. 2009]]  |
|//X. oryzae// pv. //oryzae//   |//Xa12// (//Xa-kg//)  |   |   |[[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol1/v1I5.html|Yamada 1984]]  |
|//X. oryzae// pv. //oryzae//   |//xa13//   |   |   |[[https://doi.org/10.1101/gad.1416306|Chu et al. 2006]] \\  [[https://doi.org/10.1073/pnas.0604088103|Yang et al. 2006]]  |
|//X. oryzae// pv. //oryzae//   |//Xa14//   |   |   |[[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol4/v4p101.html|Taura et al. 1987]]  |
|//X. oryzae// pv. //oryzae//   |//Xa15//   |   |   |   |
|//X. oryzae// pv. //oryzae//   |//Xa16//   |Te-tep  |Identified  |[[https://doi.org/10.3186/jjphytopath.55.201|Noda & Ohuchi 1989]]  |
|//X. oryzae// pv. //oryzae//   |//Xa17//   |Asominori  |Identified  |Ogawa et al. 1989, Japan. J. Breed. 39(Suppl. 1): 196-197  |
|//X. oryzae// pv. //oryzae//   |//Xa18//   |Toyonishiki  |Identified  |[[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol6/v6p2b.html|Yamamoto & Ogawa 1989]]  |
|//X. oryzae// pv. //oryzae//   |//xa19//   |Source: XM5, a rice mutant line derived from resistant N-methyl-N-nitrosourea-treated plants  |Identified  |[[https://doi.org/10.1270/jsbbs1951.41.427|Taura et al. 1991]]  |
|//X. oryzae// pv. //oryzae//   |//xa20//   |Source: XM6, a rice mutant line derived from resistant N-methyl-N-nitrosourea-treated plants  |Identified  |[[https://doi.org/10.1270/jsbbs1951.42.7|Taura et al. 1992]]  |
|//X. oryzae// pv. //oryzae//   |//[[:plant:rice:xa21|Xa21]]//   |Resistance gene against several Xoo races  |Sequenced  |[[https://doi.org/10.1126/science.270.5243.1804|Song et al. 1995]]  |
|//X. oryzae// pv. //oryzae//   |//Xa22(t)//   |Source: Zhachabglong (ZCL), a regional rice variety from Yunnan province  |Mapped  |[[http://doi.org/10.1094/PHYTO.2003.93.10.1258|Wang et al. 2003]]  |
|//X. oryzae// pv. //oryzae//   |//Xa23//   |   |Sequenced  |[[http://doi.org/10.1093/mp/ssu132|Wang et al. 2014]]  |
|//X. oryzae// pv. //oryzae//   |//xa24//   |   |   |[[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol16/v16p92.html|Khush & Angeles 1999]] \\  [[https://shigen.nig.ac.jp/rice/oryzabase/asset/rgn/vol17/d29.html|Lee et al. 2000]]  |
|//X. oryzae// pv. //oryzae//   |//Xa25//   |Source: Somaclonal mutant HX-3 (//indica//)  |   |[[https://www.ncbi.nlm.nih.gov/pubmed/11901997|Gao et al. 2002]] \\  [[https://doi.org/10.4172/jrr.1000104|Gao & Su 2013]]  |
|//X. oryzae// pv. //oryzae//   |//Xa25//   |   |   |[[https://doi.org/10.1094/PHYTO.2002.92.7.750|Chen et al. 2002]] \\  [[https://doi.org/10.1111/j.1365-3040.2011.02391.x|Liu et al. 2011]]  |
|//X. oryzae// pv. //oryzae//   |//Xa26//   |   |   |[[https://doi.org/10.1046/j.1365-313X.2003.01976.x|Sun et al. 2004]]  |
|//X. oryzae// pv. //oryzae//   |//Xa27//   |Source: Tetraploid wild rice// Oryza minuta//   |Sequences  |[[https://doi.org/10.1007/s00122-003-1491-x|Gu et al. 2004]] \\  [[https://doi.org/10.1038/nature03630|Gu et al. 2005]]  |
|//X. oryzae// pv. //oryzae//   |//xa26(t)//   |Source: Cultivar Nep Bha Bong To  |Identified  |[[https://doi.org/10.1094/PHYTO.2003.93.2.147|Lee et al. 2003]]  |
|//X. oryzae// pv. //oryzae//   |//Xa27(t)//   |Source: Cultivar Arai Raj  |Identified  |[[https://doi.org/10.1094/PHYTO.2003.93.2.147|Lee et al. 2003]]  |
|//X. oryzae// pv. //oryzae//   |//xa28(t)//   |Source: Cultivar Lota Sail  |Identified  |[[https://doi.org/10.1094/PHYTO.2003.93.2.147|Lee et al. 2003]]  |
|//X. oryzae// pv. //oryzae//   |//Xa29//   |Source: Wild rice //Oryza officinalis//   |Mapped  |Tan et al. 2004, Acta Genetica Sinica 31(7): 724-729  |
|//X. oryzae// pv. //oryzae//   |//Xa30(t)//   |   |Mapped  |Jin et al. 2007, Sci. Agric. Sin. 40: 1094-1100  |
|//X. oryzae// pv. //oryzae//   |//Xa31(t)//   |Source: Zhachabglong (ZCL), a regional rice variety from Yunnan province  |Mapped  |[[https://10.1007/s10658-008-9356-4|Wang et al. 2009]]  |
|//X. oryzae// pv. //oryzae//   |//Xa32(t)//   |   |Mapped  |[[http://ttps://doi.org/10.1016/S1875-2780(08)60089-9|Zheng et al. 2009]]  |
|//X. oryzae// pv. //oryzae//   |//Xa33//   |Source: //Oryza nivara// (accession IRGC 105710)  |Mapped  |[[https://doi.org/10.1094/PHYTO-03-11-0075|Kumar et al. 2012]]  |
|//X. oryzae// pv. //oryzae//   |//xa34(t)//   |Source: //Oryza sativa// ssp. //indica// cultivar BG1222  |Mapped  |[[https://doi.org/10.1007/s00122-011-1534-7|Chen et al. 2011]]  |
|//X. oryzae// pv. //oryzae//   |//Xa35(t)//   |Source: Oryza minuta  |Mapped  |Guo et al. 2010, Sci. Agric. Sin. 43(13): 2611-2618  |
|//X. oryzae// pv. //oryzae//   |//Xa36(t)//   |Source: Rice germplasm C4059  |Mapped  |Miao et al. 2010, Sci. Agric. Sin. 43(15): 3051-3058  |
|//X. oryzae// pv. //oryzae//   |//xa37(t)//   |Promoter variant of //Os12aN3//   |   |Antony 2010, Dissertation Kansas State University  |
|//X. oryzae// pv. //oryzae//   |//Xa38//   |Source: // Oryza nivara // (accession IRGC 81825)  |Mapped  |[[https://doi.org/10.1017/S0016672308009786|Cheema et al. 2008]] \\  [[https://doi.org/10.1007/s11032-011-9646-y|Bhasin et al. 2012]] \\  [[https://doi.org/10.1038/srep29188|Ellur et at. 2016]]  |
|//X. oryzae// pv. //oryzae//   |//Xa39//   |Source: Rice introgression line (IL) FF329  |Mapped  |[[https://doi.org/10.1111/ppa.12283|Zhang et al. 2014]] \\  [[https://doi.org/10.1186/s12864-015-1329-3|Zhang et al. 2015]]  |
|//X. oryzae// pv. //oryzae//   |//Xa40//   |Source: //Oryza sativa// subsp. //indica //donor line IR65482-7-216-1-2  |Mapped  |[[https://doi.org/10.1007/s00122-015-2557-2|Kim et al. 2015]]  |
|//X. oryzae// pv. //oryzae//   |//xa41(t)//   |Source: //Oryza glaberrima// and some //Oryza barthii// accessions  |Sequenced  |[[https://doi.org/10.1111/tpj.13042|Hutin et al. 2015]]  |
|//X. oryzae// pv. //oryzae//   |//xa42//   |Source: XM14, a rice mutant line derived from resistant N-methyl-N-nitrosourea-treated IR24  |Mapped  |[[https://doi.org/10.1270/jsbbs.16062|Busungu et al. 2016 ]] \\  [[https://doi.org/10.1270/jsbbs.17094|Busungu et al. 2018]]  |
|//X. oryzae// pv. //oryzae//   |//xa42(t)//   |Source: Rice cultivar Baixiangzhan  |Mapped  |[[http://doi.org/10.1111/pbr.12493|Liang et al. 2016]]  |
|//X. oryzae// pv. //oryzae//   |//Xa43(t)//   |QTL //qBB11//   |Mapped  |[[https://doi.org/10.1371/journal.pone.0211775|Kim & Reinke 2019]]  |
|//X. oryzae// pv. //oryzae//   |//xa44(t)//   |Major QTL //qBB_11 //on chromosome 11  |Mapped  |[[https://doi.org/10.1007/s00122-018-3187-2|Kim 2018]]  |

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