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bacteria:t3e:xopak [2020/06/08 18:45] rkoebnik [Biological function] |
bacteria:t3e:xopak [2020/09/29 12:31] bosis |
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====== XopAK ====== | ====== XopAK ====== | ||
- | Author: Vittoria Catara\\ | + | Author: |
- | Internal reviewer: Ralf Koebnik\\ | + | Internal reviewer: |
- | Expert reviewer: | + | Expert reviewer: |
Class: XopAK\\ | Class: XopAK\\ | ||
Family: XopAK\\ | Family: XopAK\\ | ||
- | Prototype: XopAK (// | + | Prototype: XopAK (// |
RefSeq ID: [[https:// | RefSeq ID: [[https:// | ||
3D structure: Unknown | 3D structure: Unknown | ||
+ | ===== Biological function ===== | ||
+ | |||
+ | === How discovered? === | ||
+ | |||
+ | XopAK was discovered using a machine-learning approach (Teper //et al//., 2016). | ||
+ | === (Experimental) evidence for being a T3E === | ||
+ | |||
+ | XopAK, fused to the AvrBs2 reporter, was shown to translocate into plant cells in an // | ||
+ | === Regulation === | ||
+ | |||
+ | Unknown. | ||
+ | |||
+ | === Phenotypes === | ||
+ | |||
+ | Disease severity, ion leakage, chlorophyll content of pepper plants inoculated with a mutant strain obtained by insertion mutagenesis of //xopAK// and //in planta// bacterial growth were not affected as compared to plants inoculated with the parent strain //X. euvesicatoria// | ||
+ | === Localization === | ||
+ | |||
+ | Unknown. | ||
+ | |||
+ | === Enzymatic function === | ||
+ | |||
+ | XopAK has been predicted to be a deaminase (Teper //et al//., 2016). | ||
+ | === Interaction partners === | ||
+ | |||
+ | Unknown. | ||
===== Conservation ===== | ===== Conservation ===== | ||
Line 16: | Line 41: | ||
=== In xanthomonads === | === In xanthomonads === | ||
- | Yes (//e.g.//, //X. euvesicatoria//, | + | Yes (//e.g.//, //X. citri, |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
- | Yes (//e.g.//, //Ralstonia solanacearum// | + | Yes (//e.g.//, // |
===== References ===== | ===== References ===== | ||
- | Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016) Whole-Genome Sequences | + | Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016). Whole-genome sequences |
- | Li G, Froehlich JE, Elowsky C, Msanne J, Ostosh AC, Zhang C, Awada T, Alfano JR (2014) Distinct | + | He P, Chintamanani S, Chen Z, Zhu L, Kunkel BN, Alfano JR, Tang X, Zhou JM (2004). Activation of a COI1-dependent pathway in // |
- | Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel // | + | Li G, Froehlich JE, Elowsky C, Msanne J, Ostosh AC, Zhang C, Awada T, Alfano JR (2014). Distinct // |
+ | |||
+ | Petnicki-Ocwieja T, Schneider DJ, Tam VC, Chancey ST, Shan L, Jamir Y, Schechter LM, Janes MD, Buell CR, Tang X, Collmer A, Alfano JR (2002). Genomewide identification of proteins secreted by the Hrp type III protein secretion system of // | ||
+ | |||
+ | Schechter LM, Roberts KA, Jamir Y, Alfano JR, Collmer A (2004). // | ||
+ | |||
+ | Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel // | ||
+ | |||
+ | ===== Biological function ===== | ||
+ | |||
+ | === How discovered? === | ||
+ | |||
+ | XopAK was discovered using a machine-learning approach (Teper //et al//., 2016). | ||
+ | === (Experimental) evidence for being a T3E === | ||
+ | |||
+ | XopAK, fused to the AvrBs2 reporter, was shown to translocate into plant cells in an // | ||
+ | === Regulation === | ||
+ | |||
+ | Unknown. | ||
+ | |||
+ | === Phenotypes === | ||
+ | |||
+ | Disease severity, ion leakage, chlorophyll content of pepper plants inoculated with a mutant strain obtained by insertion mutagenesis of //xopAK// and //in planta// bacterial growth were not affected as compared to plants inoculated with the parent strain //X. euvesicatoria// | ||
+ | === Localization === | ||
+ | |||
+ | Unknown. | ||
+ | |||
+ | === Enzymatic function === | ||
+ | |||
+ | XopAK has been predicted to be a deamidase (Teper //et al//., 2016). | ||
+ | === Interaction partners === | ||
+ | |||
+ | Unknown. | ||
===== Conservation ===== | ===== Conservation ===== | ||
=== In xanthomonads === | === In xanthomonads === | ||
- | Yes (//e.g.//, // | ||
+ | Yes (//e.g.//, //X. citri, X. euvesicatoria//, | ||
=== In other plant pathogens/ | === In other plant pathogens/ | ||
- | Yes (//e.g.//, //Ralstonia solanacearum// | ||
+ | Yes (//e.g.//, // | ||
===== References ===== | ===== References ===== | ||
- | Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016) Whole-Genome Sequences | + | Barak JD, Vancheva T, Lefeuvre P, Jones JB, Timilsina S, Minsavage GV, Vallad GE, Koebnik R (2016). Whole-genome sequences |
+ | |||
+ | He P, Chintamanani S, Chen Z, Zhu L, Kunkel BN, Alfano JR, Tang X, Zhou JM (2004). Activation of a COI1-dependent pathway in // | ||
+ | |||
+ | Li G, Froehlich JE, Elowsky C, Msanne J, Ostosh AC, Zhang C, Awada T, Alfano JR (2014). Distinct // | ||
+ | |||
+ | Petnicki-Ocwieja T, Schneider DJ, Tam VC, Chancey ST, Shan L, Jamir Y, Schechter LM, Janes MD, Buell CR, Tang X, Collmer A, Alfano JR (2002). Genomewide identification of proteins secreted by the Hrp type III protein secretion system of // | ||
- | Li G, Froehlich JE, Elowsky C, Msanne J, Ostosh AC, Zhang C, Awada T, Alfano JR (2014) Distinct | + | Schechter LM, Roberts KA, Jamir Y, Alfano JR, Collmer A (2004). //Pseudomonas// syringae |
- | Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel // | + | Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel // |