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--- bacteria:t3e:xopal2 [2020/08/03 22:05]
rkoebnik [References]
+++ bacteria:t3e:xopal2 [2020/08/09 17:51]
rkoebnik [Biological function]
@@ Line 2: / Line 2: @@
 Author: [[https://www.researchgate.net/profile/Matthieu_Arlat|Matthieu Arlat]]\\
-Internal reviewer: FIXME \\
+Internal reviewer: [[https://www.researchgate.net/profile/Ralf_Koebnik|Ralf Koebnik]]\\
 Expert reviewer: FIXME
@@ Line 15: / Line 15: @@
 === How discovered? ===
-Gene annotated in the genome of //Xanthomonas// campestris pv. //campestris// B100 (XccB100) (Vorhölter //et al//., 2008).
+Gene annotated in the genome of //Xanthomonas// //campestris// pv. //campestris// B100 (Xcc<sub>B100</sub>) (Vorhölter //et al//., 2008).
 === (Experimental) evidence for being a T3E ===
-No experimental evidence. Identified in XccB100 genome and annotated as XopAL2, displays 29% identity and 43% similarity with XopAL1 at the aa level.
+No experimental evidence. Identified in Xcc<sub>B100</sub> genome and annotated as XopAL2, displays 29% identity and 43% similarity with XopAL1 at the amino acid sequence level.
 === Regulation ===
-Presence of a putative PIP box in the promoter region (M. Arlat, personnal communication).
+Presence of a putative PIP box in the promoter region (Matthieu Arlat, personnal communication).
 === Phenotypes ===
-Unknown.
+XopAL2 was found to be associated with variations in disease symptoms when testing a set of 45 //X. campestris //pv. //campestris// strains on two Arabidopsis natural accessions (Guy //et al.//, 2013).
 === Localization ===
@@ Line 52: / Line 50: @@
 Bocsanczy AM, Schneider DJ, DeClerck GA, Cartinhour S, Beer SV (2012). HopX1 in //Erwinia amylovora// functions as an avirulence protein in apple and is regulated by HrpL. J Bacteriol. 194: 553-560. DOI: [[https://doi.org/10.1128/JB.05065-11|10.1128/JB.05065-11]].
-Guy E, Genissel A, Hajri A, Chabannes M, David P, Carrere S, Lautier M, Roux B, Boureau T, Arlat M, Poussier S, Noël LD (2013). Natural genetic variation of //Xanthomonas campestris// pv. //campestris// pathogenicity on //Arabidopsis// revealed by association and reverse genetics. mBio 4: e00538-12. DOI: [[https://doi.org/10.1128/mBio.00538-12|10.1128/mBio.00538-12]]. Erratum in: MBio (2013) 4: e00978-13. FIXME  Information needs to be added to the profile!
+Guy E, Genissel A, Hajri A, Chabannes M, David P, Carrere S, Lautier M, Roux B, Boureau T, Arlat M, Poussier S, Noël LD (2013). Natural genetic variation of //Xanthomonas campestris// pv. //campestris// pathogenicity on //Arabidopsis// revealed by association and reverse genetics. mBio 4: e00538-12. DOI: [[https://doi.org/10.1128/mBio.00538-12|10.1128/mBio.00538-12]]. Erratum in: MBio (2013) 4: e00978-13.
 Nissinen RM, Ytterberg AJ, Bogdanove AJ, Van Wijk KJ, Beer SV. (2007). Analyses of the secretomes of //Erwinia amylovora// and selected //hrp// mutants reveal novel type III secreted proteins and an effect of HrpJ on extracellular harpin levels. Mol. Plant Pathol. 8: 55-67. DOI: [[https://doi.org/10.1111/j.1364-3703.2006.00370.x|10.1111/j.1364-3703.2006.00370.x]].

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