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--- bacteria:t3e:xope5 [2020/04/21 23:23]
127.0.0.1 external edit
+++ bacteria:t3e:xope5 [2020/07/08 18:52] (current)
rkoebnik [XopE5]
@@ Line 1: / Line 1: @@
 ====== XopE5 ======
-Author: Jaime Cubero\\
+Author: [[https://www.researchgate.net/profile/Jaime_Cubero|Jaime Cubero]]\\
-Internal reviewer: FIXME\\
+Internal reviewer: [[https://www.researchgate.net/profile/Eran_Bosis|Eran Bosis]]\\
 Expert reviewer: FIXME
-Class: XopE5\\
+Class: XopE\\
-Family: XopE\\
+Family: XopE5\\
 Prototype: (//Xanthomonas translucens//)\\
-RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_142743200.1|WP_142743200.1]] (373 aa)\\
+RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/WP_142743200.1|WP_142743200.1]]\\
-D structure: Unknown.
+D structure: Unknown
 ===== Biological function =====
 === How discovered? ===
-XopE5 (HopX1) was first identified by sequence homology searches (Peng //et al//., 2016; Falahi //et al//., 2017).
+XopE5 (HopX1) was first identified by sequence homology searches (Peng //et al//., 2016; Falahi //et al//., 2017).
 === (Experimental) evidence for being a T3E ===
 Homology to other XopE effectors.
 === Regulation ===
 Not known.
 === Phenotypes ===
 Not known.
 === Localization ===
 Not known.
 === Enzymatic function ===
-XopE5 belongs to the HopX effector family, which are part of the transglutaminase superfamily (Nimchuk //et al//., 2007).
+XopE5 belongs to the HopX effector family, which are part of the transglutaminase superfamily (Nimchuk //et al//., 2007).
 === Interaction partners ===
 Not known.
@@ Line 37: / Line 42: @@
 === In xanthomonads ===
-Yes (//e.g.//, //X. translucens// pv. //cerealis// and pv. //undulosa//).\\
+Yes (//e.g.//, //X. translucens// pv. //cerealis// and pv. //undulosa//).
 === In other plant pathogens/symbionts ===
 Not known.
 ===== References =====
-Falahi Charkhabi N, Booher NJ, Peng Z, Wang L, Rahimian H, Shams-Bakhsh M, Liu Z, Liu S, White FF, Bogdanove AJ (2017). Complete genome sequencing and targeted mutagenesis reveal virulence vontributions of Tal2 and Tal4b of //Xanthomonas translucens// pv. undulosa ICMP11055 in bacterial leaf streak of wheat. Front. Microbiol. 10;8:1488. DOI: [[https://doi.org/10.3389/fmicb.2017.01488|10.3389/fmicb.2017.01488]].
+Falahi Charkhabi N, Booher NJ, Peng Z, Wang L, Rahimian H, Shams-Bakhsh M, Liu Z, Liu S, White FF, Bogdanove AJ (2017). Complete genome sequencing and targeted mutagenesis reveal virulence vontributions of Tal2 and Tal4b of //Xanthomonas translucens// pv. //undulosa// ICMP11055 in bacterial leaf streak of wheat. Front. Microbiol. 8: 1488. DOI: [[https://doi.org/10.3389/fmicb.2017.01488|10.3389/fmicb.2017.01488]].
-Nimchuk ZL, Fisher EJ, Desvaux D, Chang JH, Dangl JL (2007). The HopX (AvrPphE) family of //Pseudomonas syringae// type III effectors require a catalytic triad and a novel N-terminal domain forfunction. Mol. Plant-Microbe Interact. 20(4):346-357. DOI: [[https://doi.org/10.1094/MPMI-20-4-0346|10.1094/MPMI-20-4-0346]].
+Nimchuk ZL, Fisher EJ, Desvaux D, Chang JH, Dangl JL (2007). The HopX (AvrPphE) family of //Pseudomonas syringae// type III effectors require a catalytic triad and a novel N-terminal domain forfunction. Mol. Plant Microbe Interact. 20: 346-357. DOI: [[https://doi.org/10.1094/MPMI-20-4-0346|10.1094/MPMI-20-4-0346]].
-Peng Z, Hu Y, Xie J, Potnis N, Akhunova A, Jones J, Liu Z, White F, Liu S (2016). Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of //Xanthomonas translucens//. BMC Genomics 17:21.  DOI: [[https://doi.org/10.1186/s12864-015-2348-9|10.1186/s12864-015-2348-9]].
+Peng Z, Hu Y, Xie J, Potnis N, Akhunova A, Jones J, Liu Z, White F, Liu S (2016). Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of //Xanthomonas translucens//. BMC Genomics 17: 21. DOI: [[https://doi.org/10.1186/s12864-015-2348-9|10.1186/s12864-015-2348-9]].

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