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typing:molecular_typing [2022/04/27 10:30] rkoebnik [Tools for molecular typing of regulated Xanthomonas] |
typing:molecular_typing [2022/10/25 13:47] (current) rkoebnik [References] |
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- | ====== | + | ====== |
- | ^ Pathogen | + | This data is based on the review by [[https:// |
- | |**A1 list** ||||| | + | |
- | |//X//. //citri// pv. aurantifolii | + | |
- | |//X//. //citri// pv. citri |[[https:// | + | |
- | |//X//. // | + | |
- | |//X//. //oryzae// pv. oryzae | + | |
- | |//X//. //oryzae// pv. oryzicola | + | |
- | |**A2 list** ||||| | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | |//X//. // | + | |
- | < | + | **Tools for molecular typing of regulated Xanthomonas** |
+ | ^ Pathogen | ||
+ | | **A1 list** | ||
+ | | //X//. //citri// pv. aurantifolii | ||
+ | | //X//. //citri// pv. citri | [[https:// | ||
+ | | //X//. // | ||
+ | | //X//. //oryzae// pv. oryzae | ||
+ | | //X//. //oryzae// pv. oryzicola | ||
+ | | **A2 list** | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | | //X//. // | ||
+ | < | ||
===== References ===== | ===== References ===== | ||
+ | |||
+ | Bellanger N, Dereeper A, Koebnik R (2022). Clustered regularly interspaced short palindromic repeats in // | ||
Boudon S, Manceau C, Nottéghem JL (2005). Structure and origin of // | Boudon S, Manceau C, Nottéghem JL (2005). Structure and origin of // | ||
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Pruvost O, Boyer K, Ravigné V, Richard D, Vernière C (2019). Deciphering how plant pathogenic bacteria disperse and meet: Molecular epidemiology of // | Pruvost O, Boyer K, Ravigné V, Richard D, Vernière C (2019). Deciphering how plant pathogenic bacteria disperse and meet: Molecular epidemiology of // | ||
+ | |||
+ | Pruvost O, Ibrahim YE, Sharafaddin AH, Boyer K, Widyawan A, Al-Saleh MA (2022). Molecular epidemiology of the citrus bacterial pathogen // | ||
Pruvost O, Magne M, Boyer K, Leduc A, Tourterel C, Drevet C, Ravigné V, Gagnevin L, Guérin F, Chiroleu F, Koebnik R, Verdier V, Vernière C (2014). A MLVA genotyping scheme for global surveillance of the citrus pathogen // | Pruvost O, Magne M, Boyer K, Leduc A, Tourterel C, Drevet C, Ravigné V, Gagnevin L, Guérin F, Chiroleu F, Koebnik R, Verdier V, Vernière C (2014). A MLVA genotyping scheme for global surveillance of the citrus pathogen // | ||
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Rademaker JL, Norman DJ, Forster RL, Louws FJ, Schultz MH, de Bruijn FJ (2006). Classification and identification of // | Rademaker JL, Norman DJ, Forster RL, Louws FJ, Schultz MH, de Bruijn FJ (2006). Classification and identification of // | ||
+ | |||
+ | Richard D, Ravigné V, Rieux A, Facon B, Boyer C, Boyer K, Grygiel P, Javegny S, Terville M, Canteros BI, Robène I, Vernière C, Chabirand A, Pruvost O, Lefeuvre P (2017). Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements. Mol. Ecol. 26: 2131-2149. doi: [[https:// | ||
Roberts PD, Hodge NC, Bouzar H, Jones JB, Stall RE, Berger RD, Chase AR (1998). Relatedness of strains of // | Roberts PD, Hodge NC, Bouzar H, Jones JB, Stall RE, Berger RD, Chase AR (1998). Relatedness of strains of // | ||
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Vancheva T, Bogatzevska N, Moncheva P, Mitrev S, Vernière C, Koebnik R (2021). Molecular epidemiology of // | Vancheva T, Bogatzevska N, Moncheva P, Mitrev S, Vernière C, Koebnik R (2021). Molecular epidemiology of // | ||
+ | |||
+ | Vernière C, Bui Thi Ngoc L, Jarne P, Ravigné V, Guérin F, Gagnevin L, Le Mai N, Chau NM, Pruvost O (2014). Highly polymorphic markers reveal the establishment of an invasive lineage of the citrus bacterial pathogen // | ||
Wonni I, Cottyn B, Detemmerman L, Dao S, Ouedraogo L, Sarra S, Tekete C, Poussier S, Corral R, Triplett L, Koita O, Koebnik R, Leach J, Szurek B, Maes M, Verdier V (2014). Analysis of // | Wonni I, Cottyn B, Detemmerman L, Dao S, Ouedraogo L, Sarra S, Tekete C, Poussier S, Corral R, Triplett L, Koita O, Koebnik R, Leach J, Szurek B, Maes M, Verdier V (2014). Analysis of // | ||
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===== Further reading ===== | ===== Further reading ===== | ||
- | Catara V, Cubero J, Pothier JF, Bosis E, Bragard C, Đermić E, Holeva MC, Jacques MA, Petter F, Pruvost O, Robène I, Studholme DJ, Tavares F, Vicente JG, Koebnik R, Costa J (2021). Trends in molecular diagnosis and diversity studies for phytosanitary regulated // | + | Catara V, Cubero J, Pothier JF, Bosis E, Bragard C, Đermić E, Holeva MC, Jacques MA, Petter F, Pruvost O, Robène I, Studholme DJ, Tavares F, Vicente JG, Koebnik R, Costa J (2021). Trends in molecular diagnosis and diversity studies for phytosanitary regulated // |