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bacteria:t3e:xopae [2020/07/09 12:33] rkoebnik [References] |
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- | ====== XopAE ====== | ||
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- | Author: [[https:// | ||
- | Internal reviewer: [[https:// | ||
- | Expert reviewer: FIXME | ||
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- | Class: XopAE\\ | ||
- | Family: XopAE\\ | ||
- | Prototype: XopAE (// | ||
- | RefSeq ID: [[https:// | ||
- | Synonyms: XopAE also referred to as HpaF (Kim //et al.//, 2003; Sugio //et al.//, 2005). In //Xcv// strain 85-10, the gene is bipartite and the two parts were coined //hpaF// and //hpaG// (Noël //et al.//, 2002). However, //hpaG// was used by others to designate the homolog of //hpa1// (//X. campestris//, | ||
- | 3D structure: E3 ubiquitin ligase, based on homology modelling. Similar fold to that of XopL (Popov //et al//., 2018). | ||
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- | ===== The locus ===== | ||
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- | The //xopAE// locus in the majority of the // | ||
- | ===== Biological function ===== | ||
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- | === How discovered? === | ||
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- | XopAE was discovered by DNA sequencing of the //X. euvesicatoria// | ||
- | === (Experimental) evidence for being a T3E === | ||
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- | XopAE preceded by //hpaF// was fused to the AvrBs2 reporter and shown to translocate into plant cells in an // | ||
- | === Regulation === | ||
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- | In //X. euvesicatoria// | ||
- | === Phenotypes === | ||
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- | XopAE< | ||
- | === Localization === | ||
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- | Cytoplasm and nucleus (Popov //et al//., 2016). | ||
- | === Enzymatic function === | ||
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- | XopAE is an active E3 ubiquitin ligase //in vitro// (Popov //et al//., 2018). | ||
- | === Interaction partners === | ||
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- | Unknown. | ||
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- | ===== Conservation ===== | ||
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- | === In xanthomonads === | ||
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- | Yes (//e.g.//, the //xopAE// locus is present in sequenced genomes of //X. alfalfae//, //X. euvesicatoria//, | ||
- | === In other plant pathogens/ | ||
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- | Yes. There are homologues in // | ||
- | ===== References ===== | ||
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- | Kim JG, Park BK, Yoo CH, Jeon E, Oh J, Hwang I (2003). Characterization of the // | ||
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- | Noël L, Thieme F, Nennstiel D, Bonas U (2002). Two novel type III-secreted proteins of // | ||
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- | Popov G, Fraiture M, Brunner F, Sessa G (2016). Multiple // | ||
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- | Popov G, Majhi BB, Sessa G (2018). Effector gene //xopAE// of // | ||
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- | Sugio A, Yang B, White FF (2005). Characterization of the //hrpF// pathogenicity peninsula of // | ||
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- | ===== Further reading ===== | ||
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- | Zhao S, Mo WL, Wu F, Tang W, Tang JL, Szurek B, Verdier V, Koebnik R, Feng JX (2013). Identification of non-TAL effectors in // | ||