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bacteria:t3e:xopap [2020/07/09 14:06] rkoebnik [References] |
bacteria:t3e:xopap [2020/08/02 23:37] jfpothier |
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Author: [[https:// | Author: [[https:// | ||
- | Internal reviewer: | + | Internal reviewer: |
Expert reviewer: FIXME | Expert reviewer: FIXME | ||
Class: XopAP\\ | Class: XopAP\\ | ||
Family: XopAP\\ | Family: XopAP\\ | ||
- | Prototype: XopAP (// | + | Prototype: XopAP (// |
RefSeq ID: [[https:// | RefSeq ID: [[https:// | ||
3D structure: Unknown | 3D structure: Unknown | ||
Line 15: | Line 15: | ||
=== How discovered? === | === How discovered? === | ||
- | XopAP (XCV3138 in //X. euvesicatoria// | + | XopAP ([[http:// |
=== (Experimental) evidence for being a T3E === | === (Experimental) evidence for being a T3E === | ||
Line 21: | Line 21: | ||
=== Regulation === | === Regulation === | ||
- | Unknown. In //X. euvesicatoria// | + | Unknown. In //X. euvesicatoria// |
=== Phenotypes === | === Phenotypes === | ||
- | A // | + | A // |
+ | |||
+ | XopAP was shown to be induced in //X. citri// subsp. //citri// strain 306 in nutrient broth (NB; Jalan //et al//., 2013). | ||
=== Localization === | === Localization === | ||
Line 30: | Line 32: | ||
=== Enzymatic function === | === Enzymatic function === | ||
- | Unknown. XopAL contains a putative lipase domain (lipase class 3 family domain; conserved protein domain family PLN03037) in amino acid positions 236-322 (Teper //et al//., 2016). | + | Unknown. XopAL contains a putative lipase domain (lipase class 3 family domain; conserved protein domain family |
=== Interaction partners === | === Interaction partners === | ||
Line 39: | Line 41: | ||
=== In xanthomonads === | === In xanthomonads === | ||
- | Yes (//e.g.,// //X. campestris//, | + | Yes (//e.g.,// //X. campestris//, |
=== In other plant pathogens/ | === In other plant pathogens/ | ||
- | Yes (// | + | Yes (// |
===== References ===== | ===== References ===== | ||
+ | |||
+ | Jalan N, Kumar D, Andrade MO, Yu F, Jones JB, Graham JH, White FF, Setubal JC, Wang N (2013). Comparative genomic and transcriptome analyses of pathotypes of // | ||
Nakano M, Mukaihara T (2018). //Ralstonia solanacearum// | Nakano M, Mukaihara T (2018). //Ralstonia solanacearum// | ||
Peeters N, Carrere S, Anisimova M, Plener L, Cazale AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the type III effector gene set in the //Ralstonia solanacearum// | Peeters N, Carrere S, Anisimova M, Plener L, Cazale AC, Genin S (2013). Repertoire, unified nomenclature and evolution of the type III effector gene set in the //Ralstonia solanacearum// | ||
+ | |||
+ | Peng, Z., Hu, Y., Xie, J., Potnis N, Akhunova A, Jones J, Liu Z, White FJ, Liu S (2016). Long read and single molecule DNA sequencing simplifies genome assembly and TAL effector gene analysis of // | ||
Popov G, Fraiture M, Brunner F, Sessa G (2018). Multiple // | Popov G, Fraiture M, Brunner F, Sessa G (2018). Multiple // | ||
- | Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics 12: 146. DOI: [[https:// | + | Potnis N, Krasileva K, Chow V, Almeida NF, Patil PB, Ryan RP, Sharlach M, Behlau F, Dow JM, Momol M, White FF, Preston JF, Vinatzer BA, Koebnik R, Setubal JC, Norman DJ, Staskawicz BJ, Jones JB (2011). Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper. BMC Genomics 12: 146. DOI: [[https:// |
Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel // | Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel // | ||