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bacteria:t3e:xopap

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bacteria:t3e:xopap [2020/08/02 23:46]
jfpothier 		bacteria:t3e:xopap [2020/11/26 20:21]
doron.teper
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-====== XopAP ====== 
- 
-Author: [[https://www.researchgate.net/profile/Saul_Burdman|Saul Burdman]]\\ 
-Internal reviewer: [[https://www.researchgate.net/profile/Joel_Pothier2|Joël F. Pothier]]\\ 
-Expert reviewer: FIXME 
- 
-Class: XopAP\\ 
-Family: XopAP\\ 
-Prototype: XopAP (//Xanthomonas euvesicatoria// pv. //euvesicatoria//, ex //Xanthomonas campestris// pv. //vesicatoria//; strain 85-10)\\ 
-RefSeq ID: [[https://www.ncbi.nlm.nih.gov/protein/CAJ24869.1|CAJ24869.1]] (464 aa)\\ 
-3D structure: Unknown 
- 
 ===== Biological function ===== ===== Biological function =====
  
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 === Regulation === === Regulation ===
  
-Unknown. In //X. euvesicatoria// strain 85-10, the //xopAP// gene does not contain a PIP-box motif in its promoter region (Teper //et al//., 2016).+In //X. euvesicatoria// strain 85-10, the //xopAP// gene does not contain a PIP-box motif in its promoter region (Teper //et al//., 2016).  //xopAP  //in // X. citri  //pv. // citri  //is positively regulated by the stringent response regulators RelA and SpoT   (Zhang et al. 2019). 
 === Phenotypes === === Phenotypes ===
  
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 === Enzymatic function === === Enzymatic function ===
  
-Unknown. XopAL contains a putative lipase domain (lipase class 3 family domain; conserved protein domain family [[https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PLN03037|PLN03037]]) in amino acid positions 236-322 (Teper //et al//., 2016).+Unknown. XopAP contains a putative lipase domain (lipase class 3 family domain; conserved protein domain family [[https://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PLN03037|PLN03037]]) in amino acid positions 236-322 (Teper //et al//., 2016).
 === Interaction partners === === Interaction partners ===
  
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 Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel //Xanthomonas euvesicatoria// type III effector proteins by a machine-learning approach. Mol. Plant Pathol. 17: 398-411. DOI: [[https://doi.org/10.1111/mpp.12288|10.1111/mpp.12288]] Teper D, Burstein D, Salomon D, Gershovitz M, Pupko T, Sessa G (2016). Identification of novel //Xanthomonas euvesicatoria// type III effector proteins by a machine-learning approach. Mol. Plant Pathol. 17: 398-411. DOI: [[https://doi.org/10.1111/mpp.12288|10.1111/mpp.12288]]
 +
 +Zhang Y, Teper D, Xu J, Wang N (2019).   Stringent response regulators (p)ppGpp and DksA positively regulate virulence and host adaptation of Xanthomonas citri. Mol. Plant Pathol. 20:1550-1565. DOI: [[https://bsppjournals.onlinelibrary.wiley.com/doi/full/10.1111/mpp.12865|10.1111/mpp.12865. ]]
  

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