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start [2019/03/28 11:12]
193.5.54.11
start [2022/10/25 14:00] (current)
rkoebnik
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-**EuroXanth virulence factors database**+The original **Xanthomonas.org** resource can be found **[[http://www.biopred.net/xanthomonas/|HERE]]** .
  
-Class: XopB /  +==== EuroXanth DokuWiki on diagnostic toolsvirulence factors and resistance genes ====
-Family: XopB /  +
-Prototype: (SpeciesStrain) /  +
-RefSeq ID: /  +
-3D: +
  
-__Biological function__+[[http://internet.myds.me/dokuwiki/doku.php?id=diagnostics|Diagnostic and diversity tools]]
  
-How discovered? XopB was discovered in a cDNA-AFLP screen<sup>[1]</sup>. /  +[[http://internet.myds.me/dokuwiki/doku.php?id=bacteria:bacterial_virulence_factors|Bacterial virulence factors]]
-(Experimental) evidence for being a T3EThe //xopB// gene was shown to be expressed in a //hrpG// and //hrpX//-dependent manner<sup>[1]</sup>/  +
-Mutant phenotypeA deletion of //xopB// did not affect pathogenicity or bacterial growth in plants<sup>[1]</sup>. /  +
-Enzymatic function: /  +
-Interaction partners: +
  
-__Conservation__+[[http://internet.myds.me/dokuwiki/doku.php?id=plant:plant_resistance_genes|Plant resistance genes]]
  
-In xanthomonads /  +----
-In other plant pathogens/symbionts+
  
-__References__+**Other resources:** 
 + 
 +[[https://euroxanth.eu/|EuroXanth COST Action CA16107]] 
 + 
 +[[https://iant.toulouse.inra.fr/T3E|Ralstonia T3E (Toulouse)]] 
 + 
 +[[https://www.ncbi.nlm.nih.gov/sites/batchentrez|NCBI Batch Entrez tutorial]] 
 + 
 +[[http://papers.genomics.lbl.gov/|PaperBlast]] - Find papers about a protein or its homologs
  
-  - Noël L, Thieme F, Nennstiel D, Bonas U (2001). cDNA-AFLP analysis unravels a genome-wide hrpG-regulon in the plant pathogen //Xanthomonas campestris// pv. //vesicatoria//. Mol. Microbiol. 41(6): 1271-1281.  
-  - Salomon D, Dar D, Sreeramulu S, Sessa G (2011). Expression of //Xanthomonas campestris// pv. //vesicatoria// type III effectors in yeast affects cell growth and viability. Mol. Plant Microbe Interact. 24(3): 305-314. doi: 10.1094/MPMI-09-10-0196.  
-  - Schulze S, Kay S, Büttner D, Egler M, Eschen-Lippold L, Hause G, Krüger A, Lee J, Müller O, Scheel D, Szczesny R, Thieme F, Bonas U (2012). Analysis of new type III effectors from //Xanthomonas// uncovers XopB and XopS as suppressors of plant immunity. New Phytol. 195(4): 894-911. doi: 10.1111/j.1469-8137.2012.04210.x.  
-  - Sonnewald S, Priller JP, Schuster J, Glickmann E, Hajirezaei MR, Siebig S, Mudgett MB, Sonnewald U (2012). Regulation of cell wall-bound invertase in pepper leaves by //Xanthomonas campestris// pv. //vesicatoria// type three effectors. PLoS One 7(12): e51763. doi: 10.1371/journal.pone.0051763. 
-  - Harrison J, Studholme DJ (2014). Draft genome sequence of //Xanthomonas axonopodis// pathovar //vasculorum// NCPPB 900. FEMS Microbiol Lett. 360(2): 113-116.  
-  - Priller JP, Reid S, Konein P, Dietrich P, Sonnewald S (2016). The //Xanthomonas campestris// pv. //vesicatoria// type-3 effector XopB inhibits plant defence responses by interfering with ROS production. PLoS One 11(7): e0159107. dos: 10.1371/journal.pone.0159107.  
-  - Prochaska H, Thieme S, Daum S, Grau J, Schmidtke C, Hallensleben M, John P, Bacia K, Bonas U (2018). A conserved motif promotes HpaB-regulated export of type III effectors from //Xanthomonas//. Mol. Plant Pathol. 19(11): 2473-2487. doi: 10.1111/mpp.12725.  
start.1553767939.txt.gz · Last modified: 2019/03/28 11:12 by 193.5.54.11